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LRRC37A2 (leucine rich repeat containing 37 member A2)

Identity

Alias_symbol (synonym)FLJ45049
Other aliasLRRC37
HGNC (Hugo) LRRC37A2
LocusID (NCBI) 474170
Atlas_Id 68616
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 46512710 and ends at 46555648 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KANSL1 (17q21.31) / LRRC37A2 (17q21.31)NSFP1 (17q21.31) / LRRC37A2 (17q21.31)PINK1 (1p36.12) / LRRC37A2 (17q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC37A2   32404
Cards
Entrez_Gene (NCBI)LRRC37A2  474170  leucine rich repeat containing 37 member A2
AliasesLRRC37
GeneCards (Weizmann)LRRC37A2
Ensembl hg19 (Hinxton)ENSG00000238083 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000238083 [Gene_View]  chr17:46512710-46555648 [Contig_View]  LRRC37A2 [Vega]
ICGC DataPortalENSG00000238083
TCGA cBioPortalLRRC37A2
AceView (NCBI)LRRC37A2
Genatlas (Paris)LRRC37A2
WikiGenes474170
SOURCE (Princeton)LRRC37A2
Genetics Home Reference (NIH)LRRC37A2
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC37A2  -     chr17:46512710-46555648 +  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC37A2  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblLRRC37A2 - 17q21.31 [CytoView hg19]  LRRC37A2 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBILRRC37A2 [Mapview hg19]  LRRC37A2 [Mapview hg38]
OMIM616556   
Gene and transcription
Genbank (Entrez)AK091733 AK126994 AW149940 AY386262 BC088375
RefSeq transcript (Entrez)NM_001006607
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_167251 NT_187663
Consensus coding sequences : CCDS (NCBI)LRRC37A2
Cluster EST : UnigeneHs.744758 [ NCBI ]
CGAP (NCI)Hs.744758
Alternative Splicing GalleryENSG00000238083
Gene ExpressionLRRC37A2 [ NCBI-GEO ]   LRRC37A2 [ EBI - ARRAY_EXPRESS ]   LRRC37A2 [ SEEK ]   LRRC37A2 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC37A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)474170
GTEX Portal (Tissue expression)LRRC37A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NM11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NM11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NM11
Splice isoforms : SwissVarA6NM11
PhosPhoSitePlusA6NM11
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRRC37_N    LRRC37A    LRRC37AB_C   
Domain families : Pfam (Sanger)LRR_8 (PF13855)    LRRC37 (PF15779)    LRRC37AB_C (PF14914)   
Domain families : Pfam (NCBI)pfam13855    pfam15779    pfam14914   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC37A2
DMDM Disease mutations474170
Blocks (Seattle)LRRC37A2
SuperfamilyA6NM11
Human Protein AtlasENSG00000238083
Peptide AtlasA6NM11
HPRD14227
IPIIPI00334362   IPI00980072   
Protein Interaction databases
DIP (DOE-UCLA)A6NM11
IntAct (EBI)A6NM11
FunCoupENSG00000238083
BioGRIDLRRC37A2
STRING (EMBL)LRRC37A2
ZODIACLRRC37A2
Ontologies - Pathways
QuickGOA6NM11
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLRRC37A2
Atlas of Cancer Signalling NetworkLRRC37A2
Wikipedia pathwaysLRRC37A2
Orthology - Evolution
OrthoDB474170
GeneTree (enSembl)ENSG00000238083
Phylogenetic Trees/Animal Genes : TreeFamLRRC37A2
HOVERGENA6NM11
HOGENOMA6NM11
Homologs : HomoloGeneLRRC37A2
Homology/Alignments : Family Browser (UCSC)LRRC37A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC37A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC37A2
dbVarLRRC37A2
ClinVarLRRC37A2
1000_GenomesLRRC37A2 
Exome Variant ServerLRRC37A2
ExAC (Exome Aggregation Consortium)LRRC37A2 (select the gene name)
Genetic variants : HAPMAP474170
Genomic Variants (DGV)LRRC37A2 [DGVbeta]
DECIPHERLRRC37A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC37A2 
Mutations
ICGC Data PortalLRRC37A2 
TCGA Data PortalLRRC37A2 
Broad Tumor PortalLRRC37A2
OASIS PortalLRRC37A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC37A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC37A2
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC37A2
DgiDB (Drug Gene Interaction Database)LRRC37A2
DoCM (Curated mutations)LRRC37A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC37A2 (select a term)
intoGenLRRC37A2
Cancer3DLRRC37A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616556   
Orphanet
MedgenLRRC37A2
Genetic Testing Registry LRRC37A2
NextProtA6NM11 [Medical]
TSGene474170
GENETestsLRRC37A2
Target ValidationLRRC37A2
Huge Navigator LRRC37A2 [HugePedia]
snp3D : Map Gene to Disease474170
BioCentury BCIQLRRC37A2
ClinGenLRRC37A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD474170
Chemical/Pharm GKB GenePA162394530
Clinical trialLRRC37A2
Miscellaneous
canSAR (ICR)LRRC37A2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC37A2
EVEXLRRC37A2
GoPubMedLRRC37A2
iHOPLRRC37A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:24:51 CEST 2017

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