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LRRC37A3 (leucine rich repeat containing 37 member A3)

Identity

Alias_symbol (synonym)FLJ34306
KIAA0563
Other aliasLRRC37
LRRC37A
HGNC (Hugo) LRRC37A3
LocusID (NCBI) 374819
Atlas_Id 68617
Location 17q24.1  [Link to chromosome band 17q24]
Location_base_pair Starts at 64854312 and ends at 64919480 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MAP3K3 (17q23.3) / LRRC37A3 (17q24.1)MRC2 (17q23.2) / LRRC37A3 (17q24.1)SMURF2 (17q23.3) / LRRC37A3 (17q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC37A3   32427
Cards
Entrez_Gene (NCBI)LRRC37A3  374819  leucine rich repeat containing 37 member A3
AliasesLRRC37; LRRC37A
GeneCards (Weizmann)LRRC37A3
Ensembl hg19 (Hinxton)ENSG00000176809 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176809 [Gene_View]  chr17:64854312-64919480 [Contig_View]  LRRC37A3 [Vega]
ICGC DataPortalENSG00000176809
TCGA cBioPortalLRRC37A3
AceView (NCBI)LRRC37A3
Genatlas (Paris)LRRC37A3
WikiGenes374819
SOURCE (Princeton)LRRC37A3
Genetics Home Reference (NIH)LRRC37A3
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC37A3  -     chr17:64854312-64919480 -  17q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC37A3  -     17q24.1   [Description]    (hg19-Feb_2009)
EnsemblLRRC37A3 - 17q24.1 [CytoView hg19]  LRRC37A3 - 17q24.1 [CytoView hg38]
Mapping of homologs : NCBILRRC37A3 [Mapview hg19]  LRRC37A3 [Mapview hg38]
OMIM616557   
Gene and transcription
Genbank (Entrez)AB011135 AK091625 AK294371 AK299714 AK308554
RefSeq transcript (Entrez)NM_001303255 NM_199340
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC37A3
Cluster EST : UnigeneHs.744758 [ NCBI ]
CGAP (NCI)Hs.744758
Alternative Splicing GalleryENSG00000176809
Gene ExpressionLRRC37A3 [ NCBI-GEO ]   LRRC37A3 [ EBI - ARRAY_EXPRESS ]   LRRC37A3 [ SEEK ]   LRRC37A3 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC37A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374819
GTEX Portal (Tissue expression)LRRC37A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60309   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60309  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60309
Splice isoforms : SwissVarO60309
PhosPhoSitePlusO60309
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRRC37_N    LRRC37A    LRRC37AB_C   
Domain families : Pfam (Sanger)LRR_8 (PF13855)    LRRC37 (PF15779)    LRRC37AB_C (PF14914)   
Domain families : Pfam (NCBI)pfam13855    pfam15779    pfam14914   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC37A3
DMDM Disease mutations374819
Blocks (Seattle)LRRC37A3
SuperfamilyO60309
Human Protein AtlasENSG00000176809
Peptide AtlasO60309
IPIIPI00297574   IPI01014696   IPI00878087   
Protein Interaction databases
DIP (DOE-UCLA)O60309
IntAct (EBI)O60309
FunCoupENSG00000176809
BioGRIDLRRC37A3
STRING (EMBL)LRRC37A3
ZODIACLRRC37A3
Ontologies - Pathways
QuickGOO60309
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLRRC37A3
Atlas of Cancer Signalling NetworkLRRC37A3
Wikipedia pathwaysLRRC37A3
Orthology - Evolution
OrthoDB374819
GeneTree (enSembl)ENSG00000176809
Phylogenetic Trees/Animal Genes : TreeFamLRRC37A3
HOVERGENO60309
HOGENOMO60309
Homologs : HomoloGeneLRRC37A3
Homology/Alignments : Family Browser (UCSC)LRRC37A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC37A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC37A3
dbVarLRRC37A3
ClinVarLRRC37A3
1000_GenomesLRRC37A3 
Exome Variant ServerLRRC37A3
ExAC (Exome Aggregation Consortium)LRRC37A3 (select the gene name)
Genetic variants : HAPMAP374819
Genomic Variants (DGV)LRRC37A3 [DGVbeta]
DECIPHERLRRC37A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC37A3 
Mutations
ICGC Data PortalLRRC37A3 
TCGA Data PortalLRRC37A3 
Broad Tumor PortalLRRC37A3
OASIS PortalLRRC37A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC37A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC37A3
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC37A3
DgiDB (Drug Gene Interaction Database)LRRC37A3
DoCM (Curated mutations)LRRC37A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC37A3 (select a term)
intoGenLRRC37A3
Cancer3DLRRC37A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616557   
Orphanet
MedgenLRRC37A3
Genetic Testing Registry LRRC37A3
NextProtO60309 [Medical]
TSGene374819
GENETestsLRRC37A3
Target ValidationLRRC37A3
Huge Navigator LRRC37A3 [HugePedia]
snp3D : Map Gene to Disease374819
BioCentury BCIQLRRC37A3
ClinGenLRRC37A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374819
Chemical/Pharm GKB GenePA162394563
Clinical trialLRRC37A3
Miscellaneous
canSAR (ICR)LRRC37A3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC37A3
EVEXLRRC37A3
GoPubMedLRRC37A3
iHOPLRRC37A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:30 CEST 2017

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