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LRRC37A5P (leucine rich repeat containing 37, member A5, pseudogene)

Identity

Alias_namesC9orf29
chromosome 9 open reading frame 29
Other alias
HGNC (Hugo) LRRC37A5P
LocusID (NCBI) 652972
Atlas_Id 68619
Location 9q31.3  [Link to chromosome band 9q31]
Location_base_pair Starts at 114365111 and ends at 114375833 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ASTN2 (9q33.1) / LRRC37A5P (9q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC37A5P   23369
Cards
Entrez_Gene (NCBI)LRRC37A5P  652972  leucine rich repeat containing 37, member A5, pseudogene
AliasesC9orf29
GeneCards (Weizmann)LRRC37A5P
Ensembl hg19 (Hinxton)ENSG00000204173 [Gene_View]  chr9:114365111-114375833 [Contig_View]  LRRC37A5P [Vega]
Ensembl hg38 (Hinxton)ENSG00000204173 [Gene_View]  chr9:114365111-114375833 [Contig_View]  LRRC37A5P [Vega]
ICGC DataPortalENSG00000204173
TCGA cBioPortalLRRC37A5P
AceView (NCBI)LRRC37A5P
Genatlas (Paris)LRRC37A5P
WikiGenes652972
SOURCE (Princeton)LRRC37A5P
Genetics Home Reference (NIH)LRRC37A5P
Genomic and cartography
GoldenPath hg19 (UCSC)LRRC37A5P  -     chr9:114365111-114375833 -  9q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LRRC37A5P  -     9q31.3   [Description]    (hg38-Dec_2013)
EnsemblLRRC37A5P - 9q31.3 [CytoView hg19]  LRRC37A5P - 9q31.3 [CytoView hg38]
Mapping of homologs : NCBILRRC37A5P [Mapview hg19]  LRRC37A5P [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC031236 BC040897
RefSeq transcript (Entrez)NM_001037807
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)LRRC37A5P
Cluster EST : UnigeneHs.551134 [ NCBI ]
CGAP (NCI)Hs.551134
Alternative Splicing GalleryENSG00000204173
Gene ExpressionLRRC37A5P [ NCBI-GEO ]   LRRC37A5P [ EBI - ARRAY_EXPRESS ]   LRRC37A5P [ SEEK ]   LRRC37A5P [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC37A5P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)652972
GTEX Portal (Tissue expression)LRRC37A5P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ49AS3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ49AS3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ49AS3
Splice isoforms : SwissVarQ49AS3
PhosPhoSitePlusQ49AS3
Domains : Interpro (EBI)LRRC37A/B_like    LRRC37AB_C   
Domain families : Pfam (Sanger)LRRC37AB_C (PF14914)   
Domain families : Pfam (NCBI)pfam14914   
Conserved Domain (NCBI)LRRC37A5P
DMDM Disease mutations652972
Blocks (Seattle)LRRC37A5P
SuperfamilyQ49AS3
Human Protein AtlasENSG00000204173
Peptide AtlasQ49AS3
IPIIPI00552107   IPI00552381   
Protein Interaction databases
DIP (DOE-UCLA)Q49AS3
IntAct (EBI)Q49AS3
FunCoupENSG00000204173
BioGRIDLRRC37A5P
STRING (EMBL)LRRC37A5P
ZODIACLRRC37A5P
Ontologies - Pathways
QuickGOQ49AS3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC37A5P
Atlas of Cancer Signalling NetworkLRRC37A5P
Wikipedia pathwaysLRRC37A5P
Orthology - Evolution
OrthoDB652972
GeneTree (enSembl)ENSG00000204173
Phylogenetic Trees/Animal Genes : TreeFamLRRC37A5P
HOVERGENQ49AS3
HOGENOMQ49AS3
Homologs : HomoloGeneLRRC37A5P
Homology/Alignments : Family Browser (UCSC)LRRC37A5P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC37A5P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC37A5P
dbVarLRRC37A5P
ClinVarLRRC37A5P
1000_GenomesLRRC37A5P 
Exome Variant ServerLRRC37A5P
ExAC (Exome Aggregation Consortium)LRRC37A5P (select the gene name)
Genetic variants : HAPMAP652972
Genomic Variants (DGV)LRRC37A5P [DGVbeta]
DECIPHER (Syndromes)9:114365111-114375833  ENSG00000204173
CONAN: Copy Number AnalysisLRRC37A5P 
Mutations
ICGC Data PortalLRRC37A5P 
TCGA Data PortalLRRC37A5P 
Broad Tumor PortalLRRC37A5P
OASIS PortalLRRC37A5P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLRRC37A5P
BioMutasearch LRRC37A5P
DgiDB (Drug Gene Interaction Database)LRRC37A5P
DoCM (Curated mutations)LRRC37A5P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC37A5P (select a term)
intoGenLRRC37A5P
Cancer3DLRRC37A5P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC37A5P
Genetic Testing Registry LRRC37A5P
NextProtQ49AS3 [Medical]
TSGene652972
GENETestsLRRC37A5P
Huge Navigator LRRC37A5P [HugePedia]
snp3D : Map Gene to Disease652972
BioCentury BCIQLRRC37A5P
ClinGenLRRC37A5P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD652972
Chemical/Pharm GKB GenePA142672310
Clinical trialLRRC37A5P
Miscellaneous
canSAR (ICR)LRRC37A5P (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC37A5P
EVEXLRRC37A5P
GoPubMedLRRC37A5P
iHOPLRRC37A5P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:05 CET 2017

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