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LRRC39 (leucine rich repeat containing 39)

Identity

Alias_symbol (synonym)MGC14816
Other alias-
HGNC (Hugo) LRRC39
LocusID (NCBI) 127495
Atlas_Id 68623
Location 1p21.2  [Link to chromosome band 1p21]
Location_base_pair Starts at 100148448 and ends at 100178273 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SEC63 (6q21) / LRRC39 (1p21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC39   28228
Cards
Entrez_Gene (NCBI)LRRC39  127495  leucine rich repeat containing 39
Aliases
GeneCards (Weizmann)LRRC39
Ensembl hg19 (Hinxton)ENSG00000122477 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122477 [Gene_View]  chr1:100148448-100178273 [Contig_View]  LRRC39 [Vega]
ICGC DataPortalENSG00000122477
TCGA cBioPortalLRRC39
AceView (NCBI)LRRC39
Genatlas (Paris)LRRC39
WikiGenes127495
SOURCE (Princeton)LRRC39
Genetics Home Reference (NIH)LRRC39
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC39  -     chr1:100148448-100178273 -  1p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC39  -     1p21.2   [Description]    (hg19-Feb_2009)
EnsemblLRRC39 - 1p21.2 [CytoView hg19]  LRRC39 - 1p21.2 [CytoView hg38]
Mapping of homologs : NCBILRRC39 [Mapview hg19]  LRRC39 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096892 AL711357 AL833417 AM392701 AM393106
RefSeq transcript (Entrez)NM_001256385 NM_001256386 NM_001256387 NM_144620
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC39
Cluster EST : UnigeneHs.729095 [ NCBI ]
CGAP (NCI)Hs.729095
Alternative Splicing GalleryENSG00000122477
Gene ExpressionLRRC39 [ NCBI-GEO ]   LRRC39 [ EBI - ARRAY_EXPRESS ]   LRRC39 [ SEEK ]   LRRC39 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC39 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127495
GTEX Portal (Tissue expression)LRRC39
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DD0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DD0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DD0
Splice isoforms : SwissVarQ96DD0
PhosPhoSitePlusQ96DD0
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_4    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_4 (PF12799)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam12799    pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC39
DMDM Disease mutations127495
Blocks (Seattle)LRRC39
SuperfamilyQ96DD0
Human Protein AtlasENSG00000122477
Peptide AtlasQ96DD0
HPRD17501
IPIIPI00060865   IPI00479318   
Protein Interaction databases
DIP (DOE-UCLA)Q96DD0
IntAct (EBI)Q96DD0
FunCoupENSG00000122477
BioGRIDLRRC39
STRING (EMBL)LRRC39
ZODIACLRRC39
Ontologies - Pathways
QuickGOQ96DD0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC39
Atlas of Cancer Signalling NetworkLRRC39
Wikipedia pathwaysLRRC39
Orthology - Evolution
OrthoDB127495
GeneTree (enSembl)ENSG00000122477
Phylogenetic Trees/Animal Genes : TreeFamLRRC39
HOVERGENQ96DD0
HOGENOMQ96DD0
Homologs : HomoloGeneLRRC39
Homology/Alignments : Family Browser (UCSC)LRRC39
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC39 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC39
dbVarLRRC39
ClinVarLRRC39
1000_GenomesLRRC39 
Exome Variant ServerLRRC39
ExAC (Exome Aggregation Consortium)LRRC39 (select the gene name)
Genetic variants : HAPMAP127495
Genomic Variants (DGV)LRRC39 [DGVbeta]
DECIPHERLRRC39 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC39 
Mutations
ICGC Data PortalLRRC39 
TCGA Data PortalLRRC39 
Broad Tumor PortalLRRC39
OASIS PortalLRRC39 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC39  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC39
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC39
DgiDB (Drug Gene Interaction Database)LRRC39
DoCM (Curated mutations)LRRC39 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC39 (select a term)
intoGenLRRC39
Cancer3DLRRC39(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC39
Genetic Testing Registry LRRC39
NextProtQ96DD0 [Medical]
TSGene127495
GENETestsLRRC39
Target ValidationLRRC39
Huge Navigator LRRC39 [HugePedia]
snp3D : Map Gene to Disease127495
BioCentury BCIQLRRC39
ClinGenLRRC39
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127495
Chemical/Pharm GKB GenePA142671527
Clinical trialLRRC39
Miscellaneous
canSAR (ICR)LRRC39 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC39
EVEXLRRC39
GoPubMedLRRC39
iHOPLRRC39
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:24:54 CEST 2017

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