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LRRC3B (leucine rich repeat containing 3B)

Identity

Alias_symbol (synonym)LRP15
Other alias
HGNC (Hugo) LRRC3B
LocusID (NCBI) 116135
Atlas_Id 50140
Location 3p24.1  [Link to chromosome band 3p24]
Location_base_pair Starts at 26623700 and ends at 26710774 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC3B   28105
Cards
Entrez_Gene (NCBI)LRRC3B  116135  leucine rich repeat containing 3B
AliasesLRP15
GeneCards (Weizmann)LRRC3B
Ensembl hg19 (Hinxton)ENSG00000179796 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179796 [Gene_View]  chr3:26623700-26710774 [Contig_View]  LRRC3B [Vega]
ICGC DataPortalENSG00000179796
TCGA cBioPortalLRRC3B
AceView (NCBI)LRRC3B
Genatlas (Paris)LRRC3B
WikiGenes116135
SOURCE (Princeton)LRRC3B
Genetics Home Reference (NIH)LRRC3B
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC3B  -     chr3:26623700-26710774 +  3p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC3B  -     3p24.1   [Description]    (hg19-Feb_2009)
EnsemblLRRC3B - 3p24.1 [CytoView hg19]  LRRC3B - 3p24.1 [CytoView hg38]
Mapping of homologs : NCBILRRC3B [Mapview hg19]  LRRC3B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF396933 AK311160 AM392841 AM392993 AM393162
RefSeq transcript (Entrez)NM_001317808 NM_001317809 NM_001317810 NM_001317811 NM_052953
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC3B
Cluster EST : UnigeneHs.657951 [ NCBI ]
CGAP (NCI)Hs.657951
Alternative Splicing GalleryENSG00000179796
Gene ExpressionLRRC3B [ NCBI-GEO ]   LRRC3B [ EBI - ARRAY_EXPRESS ]   LRRC3B [ SEEK ]   LRRC3B [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116135
GTEX Portal (Tissue expression)LRRC3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PB8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PB8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PB8
Splice isoforms : SwissVarQ96PB8
PhosPhoSitePlusQ96PB8
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRRNT   
Domain families : Pfam (Sanger)LRR_8 (PF13855)    LRRNT (PF01462)   
Domain families : Pfam (NCBI)pfam13855    pfam01462   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRNT (SM00013)  
Conserved Domain (NCBI)LRRC3B
DMDM Disease mutations116135
Blocks (Seattle)LRRC3B
PDB (SRS)5EMA   
PDB (PDBSum)5EMA   
PDB (IMB)5EMA   
PDB (RSDB)5EMA   
Structural Biology KnowledgeBase5EMA   
SCOP (Structural Classification of Proteins)5EMA   
CATH (Classification of proteins structures)5EMA   
SuperfamilyQ96PB8
Human Protein AtlasENSG00000179796
Peptide AtlasQ96PB8
HPRD14318
IPIIPI00044336   IPI00925694   IPI00926367   
Protein Interaction databases
DIP (DOE-UCLA)Q96PB8
IntAct (EBI)Q96PB8
FunCoupENSG00000179796
BioGRIDLRRC3B
STRING (EMBL)LRRC3B
ZODIACLRRC3B
Ontologies - Pathways
QuickGOQ96PB8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLRRC3B
Atlas of Cancer Signalling NetworkLRRC3B
Wikipedia pathwaysLRRC3B
Orthology - Evolution
OrthoDB116135
GeneTree (enSembl)ENSG00000179796
Phylogenetic Trees/Animal Genes : TreeFamLRRC3B
HOVERGENQ96PB8
HOGENOMQ96PB8
Homologs : HomoloGeneLRRC3B
Homology/Alignments : Family Browser (UCSC)LRRC3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC3B
dbVarLRRC3B
ClinVarLRRC3B
1000_GenomesLRRC3B 
Exome Variant ServerLRRC3B
ExAC (Exome Aggregation Consortium)LRRC3B (select the gene name)
Genetic variants : HAPMAP116135
Genomic Variants (DGV)LRRC3B [DGVbeta]
DECIPHERLRRC3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC3B 
Mutations
ICGC Data PortalLRRC3B 
TCGA Data PortalLRRC3B 
Broad Tumor PortalLRRC3B
OASIS PortalLRRC3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC3B
BioMutasearch LRRC3B
DgiDB (Drug Gene Interaction Database)LRRC3B
DoCM (Curated mutations)LRRC3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC3B (select a term)
intoGenLRRC3B
Cancer3DLRRC3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC3B
Genetic Testing Registry LRRC3B
NextProtQ96PB8 [Medical]
TSGene116135
GENETestsLRRC3B
Target ValidationLRRC3B
Huge Navigator LRRC3B [HugePedia]
snp3D : Map Gene to Disease116135
BioCentury BCIQLRRC3B
ClinGenLRRC3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116135
Chemical/Pharm GKB GenePA134962068
Clinical trialLRRC3B
Miscellaneous
canSAR (ICR)LRRC3B (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC3B
EVEXLRRC3B
GoPubMedLRRC3B
iHOPLRRC3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:41:35 CEST 2017

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