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LRRC40 (leucine rich repeat containing 40)

Identity

Alias_symbol (synonym)FLJ20331
Other aliasdJ677H15.1
HGNC (Hugo) LRRC40
LocusID (NCBI) 55631
Atlas_Id 68627
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 70610485 and ends at 70671361 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LRRC40 (1p31.1) / ACAD11 (3q22.1)WDR78 (1p31.3) / LRRC40 (1p31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC40   26004
Cards
Entrez_Gene (NCBI)LRRC40  55631  leucine rich repeat containing 40
AliasesdJ677H15.1
GeneCards (Weizmann)LRRC40
Ensembl hg19 (Hinxton)ENSG00000066557 [Gene_View]  chr1:70610485-70671361 [Contig_View]  LRRC40 [Vega]
Ensembl hg38 (Hinxton)ENSG00000066557 [Gene_View]  chr1:70610485-70671361 [Contig_View]  LRRC40 [Vega]
ICGC DataPortalENSG00000066557
TCGA cBioPortalLRRC40
AceView (NCBI)LRRC40
Genatlas (Paris)LRRC40
WikiGenes55631
SOURCE (Princeton)LRRC40
Genetics Home Reference (NIH)LRRC40
Genomic and cartography
GoldenPath hg19 (UCSC)LRRC40  -     chr1:70610485-70671361 -  1p31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LRRC40  -     1p31.1   [Description]    (hg38-Dec_2013)
EnsemblLRRC40 - 1p31.1 [CytoView hg19]  LRRC40 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBILRRC40 [Mapview hg19]  LRRC40 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI015897 AK000338 AK022951 AK225337 AL162076
RefSeq transcript (Entrez)NM_017768
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)LRRC40
Cluster EST : UnigeneHs.147836 [ NCBI ]
CGAP (NCI)Hs.147836
Alternative Splicing GalleryENSG00000066557
Gene ExpressionLRRC40 [ NCBI-GEO ]   LRRC40 [ EBI - ARRAY_EXPRESS ]   LRRC40 [ SEEK ]   LRRC40 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC40 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55631
GTEX Portal (Tissue expression)LRRC40
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9A6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9A6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9A6
Splice isoforms : SwissVarQ9H9A6
PhosPhoSitePlusQ9H9A6
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Leu-rich_rpt    Leu-rich_rpt_4    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_1 (PF00560)    LRR_4 (PF12799)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam00560    pfam12799    pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC40
DMDM Disease mutations55631
Blocks (Seattle)LRRC40
SuperfamilyQ9H9A6
Human Protein AtlasENSG00000066557
Peptide AtlasQ9H9A6
HPRD08622
IPIIPI00152998   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9A6
IntAct (EBI)Q9H9A6
FunCoupENSG00000066557
BioGRIDLRRC40
STRING (EMBL)LRRC40
ZODIACLRRC40
Ontologies - Pathways
QuickGOQ9H9A6
Ontology : AmiGOmembrane  
Ontology : EGO-EBImembrane  
NDEx NetworkLRRC40
Atlas of Cancer Signalling NetworkLRRC40
Wikipedia pathwaysLRRC40
Orthology - Evolution
OrthoDB55631
GeneTree (enSembl)ENSG00000066557
Phylogenetic Trees/Animal Genes : TreeFamLRRC40
HOVERGENQ9H9A6
HOGENOMQ9H9A6
Homologs : HomoloGeneLRRC40
Homology/Alignments : Family Browser (UCSC)LRRC40
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC40 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC40
dbVarLRRC40
ClinVarLRRC40
1000_GenomesLRRC40 
Exome Variant ServerLRRC40
ExAC (Exome Aggregation Consortium)LRRC40 (select the gene name)
Genetic variants : HAPMAP55631
Genomic Variants (DGV)LRRC40 [DGVbeta]
DECIPHER (Syndromes)1:70610485-70671361  ENSG00000066557
CONAN: Copy Number AnalysisLRRC40 
Mutations
ICGC Data PortalLRRC40 
TCGA Data PortalLRRC40 
Broad Tumor PortalLRRC40
OASIS PortalLRRC40 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC40  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC40
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC40
DgiDB (Drug Gene Interaction Database)LRRC40
DoCM (Curated mutations)LRRC40 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC40 (select a term)
intoGenLRRC40
Cancer3DLRRC40(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC40
Genetic Testing Registry LRRC40
NextProtQ9H9A6 [Medical]
TSGene55631
GENETestsLRRC40
Huge Navigator LRRC40 [HugePedia]
snp3D : Map Gene to Disease55631
BioCentury BCIQLRRC40
ClinGenLRRC40
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55631
Chemical/Pharm GKB GenePA142671528
Clinical trialLRRC40
Miscellaneous
canSAR (ICR)LRRC40 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC40
EVEXLRRC40
GoPubMedLRRC40
iHOPLRRC40
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:07 CET 2017

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