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LRRC43 (leucine rich repeat containing 43)

Identity

Alias_symbol (synonym)MGC35140
Other alias-
HGNC (Hugo) LRRC43
LocusID (NCBI) 254050
Atlas_Id 68629
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 122183120 and ends at 122203471 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MAP4 (3p21.31) / LRRC43 (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC43   28562
Cards
Entrez_Gene (NCBI)LRRC43  254050  leucine rich repeat containing 43
Aliases
GeneCards (Weizmann)LRRC43
Ensembl hg19 (Hinxton)ENSG00000158113 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158113 [Gene_View]  chr12:122183120-122203471 [Contig_View]  LRRC43 [Vega]
ICGC DataPortalENSG00000158113
TCGA cBioPortalLRRC43
AceView (NCBI)LRRC43
Genatlas (Paris)LRRC43
WikiGenes254050
SOURCE (Princeton)LRRC43
Genetics Home Reference (NIH)LRRC43
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC43  -     chr12:122183120-122203471 +  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC43  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblLRRC43 - 12q24.31 [CytoView hg19]  LRRC43 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBILRRC43 [Mapview hg19]  LRRC43 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124107 BC029245 DA951767
RefSeq transcript (Entrez)NM_001098519 NM_152759
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC43
Cluster EST : UnigeneHs.374856 [ NCBI ]
CGAP (NCI)Hs.374856
Alternative Splicing GalleryENSG00000158113
Gene ExpressionLRRC43 [ NCBI-GEO ]   LRRC43 [ EBI - ARRAY_EXPRESS ]   LRRC43 [ SEEK ]   LRRC43 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC43 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254050
GTEX Portal (Tissue expression)LRRC43
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N309   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N309  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N309
Splice isoforms : SwissVarQ8N309
PhosPhoSitePlusQ8N309
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Conserved Domain (NCBI)LRRC43
DMDM Disease mutations254050
Blocks (Seattle)LRRC43
SuperfamilyQ8N309
Human Protein AtlasENSG00000158113
Peptide AtlasQ8N309
HPRD14601
IPIIPI00847620   IPI00166452   IPI00412673   
Protein Interaction databases
DIP (DOE-UCLA)Q8N309
IntAct (EBI)Q8N309
FunCoupENSG00000158113
BioGRIDLRRC43
STRING (EMBL)LRRC43
ZODIACLRRC43
Ontologies - Pathways
QuickGOQ8N309
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC43
Atlas of Cancer Signalling NetworkLRRC43
Wikipedia pathwaysLRRC43
Orthology - Evolution
OrthoDB254050
GeneTree (enSembl)ENSG00000158113
Phylogenetic Trees/Animal Genes : TreeFamLRRC43
HOVERGENQ8N309
HOGENOMQ8N309
Homologs : HomoloGeneLRRC43
Homology/Alignments : Family Browser (UCSC)LRRC43
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC43
dbVarLRRC43
ClinVarLRRC43
1000_GenomesLRRC43 
Exome Variant ServerLRRC43
ExAC (Exome Aggregation Consortium)LRRC43 (select the gene name)
Genetic variants : HAPMAP254050
Genomic Variants (DGV)LRRC43 [DGVbeta]
DECIPHERLRRC43 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC43 
Mutations
ICGC Data PortalLRRC43 
TCGA Data PortalLRRC43 
Broad Tumor PortalLRRC43
OASIS PortalLRRC43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC43  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC43
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC43
DgiDB (Drug Gene Interaction Database)LRRC43
DoCM (Curated mutations)LRRC43 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC43 (select a term)
intoGenLRRC43
Cancer3DLRRC43(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC43
Genetic Testing Registry LRRC43
NextProtQ8N309 [Medical]
TSGene254050
GENETestsLRRC43
Target ValidationLRRC43
Huge Navigator LRRC43 [HugePedia]
snp3D : Map Gene to Disease254050
BioCentury BCIQLRRC43
ClinGenLRRC43
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254050
Chemical/Pharm GKB GenePA142671531
Clinical trialLRRC43
Miscellaneous
canSAR (ICR)LRRC43 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC43
EVEXLRRC43
GoPubMedLRRC43
iHOPLRRC43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:32 CEST 2017

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