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LRRC46 (leucine rich repeat containing 46)

Identity

Alias_symbol (synonym)MGC16309
Other alias-
HGNC (Hugo) LRRC46
LocusID (NCBI) 90506
Atlas_Id 68630
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 47831627 and ends at 47837713 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC46   25047
Cards
Entrez_Gene (NCBI)LRRC46  90506  leucine rich repeat containing 46
Aliases
GeneCards (Weizmann)LRRC46
Ensembl hg19 (Hinxton)ENSG00000141294 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141294 [Gene_View]  chr17:47831627-47837713 [Contig_View]  LRRC46 [Vega]
ICGC DataPortalENSG00000141294
TCGA cBioPortalLRRC46
AceView (NCBI)LRRC46
Genatlas (Paris)LRRC46
WikiGenes90506
SOURCE (Princeton)LRRC46
Genetics Home Reference (NIH)LRRC46
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC46  -     chr17:47831627-47837713 +  17q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC46  -     17q21.32   [Description]    (hg19-Feb_2009)
EnsemblLRRC46 - 17q21.32 [CytoView hg19]  LRRC46 - 17q21.32 [CytoView hg38]
Mapping of homologs : NCBILRRC46 [Mapview hg19]  LRRC46 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027206 AK292765 AK315665 BC010412 BM663857
RefSeq transcript (Entrez)NM_033413
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC46
Cluster EST : UnigeneHs.130767 [ NCBI ]
CGAP (NCI)Hs.130767
Alternative Splicing GalleryENSG00000141294
Gene ExpressionLRRC46 [ NCBI-GEO ]   LRRC46 [ EBI - ARRAY_EXPRESS ]   LRRC46 [ SEEK ]   LRRC46 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC46 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90506
GTEX Portal (Tissue expression)LRRC46
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FV0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FV0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FV0
Splice isoforms : SwissVarQ96FV0
PhosPhoSitePlusQ96FV0
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC46
DMDM Disease mutations90506
Blocks (Seattle)LRRC46
SuperfamilyQ96FV0
Human Protein AtlasENSG00000141294
Peptide AtlasQ96FV0
HPRD08320
IPIIPI00062265   
Protein Interaction databases
DIP (DOE-UCLA)Q96FV0
IntAct (EBI)Q96FV0
FunCoupENSG00000141294
BioGRIDLRRC46
STRING (EMBL)LRRC46
ZODIACLRRC46
Ontologies - Pathways
QuickGOQ96FV0
Ontology : AmiGOregulation of protein stability  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBIregulation of protein stability  positive regulation of protein targeting to mitochondrion  
NDEx NetworkLRRC46
Atlas of Cancer Signalling NetworkLRRC46
Wikipedia pathwaysLRRC46
Orthology - Evolution
OrthoDB90506
GeneTree (enSembl)ENSG00000141294
Phylogenetic Trees/Animal Genes : TreeFamLRRC46
HOVERGENQ96FV0
HOGENOMQ96FV0
Homologs : HomoloGeneLRRC46
Homology/Alignments : Family Browser (UCSC)LRRC46
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC46 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC46
dbVarLRRC46
ClinVarLRRC46
1000_GenomesLRRC46 
Exome Variant ServerLRRC46
ExAC (Exome Aggregation Consortium)LRRC46 (select the gene name)
Genetic variants : HAPMAP90506
Genomic Variants (DGV)LRRC46 [DGVbeta]
DECIPHERLRRC46 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC46 
Mutations
ICGC Data PortalLRRC46 
TCGA Data PortalLRRC46 
Broad Tumor PortalLRRC46
OASIS PortalLRRC46 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC46  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC46
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC46
DgiDB (Drug Gene Interaction Database)LRRC46
DoCM (Curated mutations)LRRC46 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC46 (select a term)
intoGenLRRC46
Cancer3DLRRC46(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC46
Genetic Testing Registry LRRC46
NextProtQ96FV0 [Medical]
TSGene90506
GENETestsLRRC46
Target ValidationLRRC46
Huge Navigator LRRC46 [HugePedia]
snp3D : Map Gene to Disease90506
BioCentury BCIQLRRC46
ClinGenLRRC46
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90506
Chemical/Pharm GKB GenePA142671506
Clinical trialLRRC46
Miscellaneous
canSAR (ICR)LRRC46 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC46
EVEXLRRC46
GoPubMedLRRC46
iHOPLRRC46
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:32 CEST 2017

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