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LRRC47 (leucine rich repeat containing 47)

Identity

Alias_symbol (synonym)KIAA1185
RP1-286D6.3
Other alias-
HGNC (Hugo) LRRC47
LocusID (NCBI) 57470
Atlas_Id 68631
Location 1p36.32  [Link to chromosome band 1p36]
Location_base_pair Starts at 3696784 and ends at 3713068 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DIABLO (12q24.31) / LRRC47 (1p36.32)LRRC47 (1p36.32) / EIF3I (1p35.1)RAB7A (3q21.3) / LRRC47 (1p36.32)
STT3A (11q24.2) / LRRC47 (1p36.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC47   29207
Cards
Entrez_Gene (NCBI)LRRC47  57470  leucine rich repeat containing 47
Aliases
GeneCards (Weizmann)LRRC47
Ensembl hg19 (Hinxton) [Gene_View]  chr1:3696784-3713068 [Contig_View]  LRRC47 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:3696784-3713068 [Contig_View]  LRRC47 [Vega]
TCGA cBioPortalLRRC47
AceView (NCBI)LRRC47
Genatlas (Paris)LRRC47
WikiGenes57470
SOURCE (Princeton)LRRC47
Genetics Home Reference (NIH)LRRC47
Genomic and cartography
GoldenPath hg19 (UCSC)LRRC47  -     chr1:3696784-3713068 -  1p36.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LRRC47  -     1p36.32   [Description]    (hg38-Dec_2013)
EnsemblLRRC47 - 1p36.32 [CytoView hg19]  LRRC47 - 1p36.32 [CytoView hg38]
Mapping of homologs : NCBILRRC47 [Mapview hg19]  LRRC47 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB033011 BC012300 BC031301
RefSeq transcript (Entrez)NM_020710
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929288
Consensus coding sequences : CCDS (NCBI)LRRC47
Cluster EST : UnigeneHs.268488 [ NCBI ]
CGAP (NCI)Hs.268488
Gene ExpressionLRRC47 [ NCBI-GEO ]   LRRC47 [ EBI - ARRAY_EXPRESS ]   LRRC47 [ SEEK ]   LRRC47 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57470
GTEX Portal (Tissue expression)LRRC47
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1G4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1G4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1G4
Splice isoforms : SwissVarQ8N1G4
PhosPhoSitePlusQ8N1G4
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)B3/B4_tRNA-bd    Leu-rich_rpt    Leu-rich_rpt_4    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)B3_4 (PF03483)    LRR_4 (PF12799)   
Domain families : Pfam (NCBI)pfam03483    pfam12799   
Domain families : Smart (EMBL)B3_4 (SM00873)  LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC47
DMDM Disease mutations57470
Blocks (Seattle)LRRC47
SuperfamilyQ8N1G4
Peptide AtlasQ8N1G4
HPRD13837
IPIIPI00170935   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1G4
IntAct (EBI)Q8N1G4
BioGRIDLRRC47
STRING (EMBL)LRRC47
ZODIACLRRC47
Ontologies - Pathways
QuickGOQ8N1G4
Ontology : AmiGOphenylalanine-tRNA ligase activity  protein binding  phenylalanyl-tRNA aminoacylation  phenylalanine-tRNA ligase complex  poly(A) RNA binding  
Ontology : EGO-EBIphenylalanine-tRNA ligase activity  protein binding  phenylalanyl-tRNA aminoacylation  phenylalanine-tRNA ligase complex  poly(A) RNA binding  
NDEx NetworkLRRC47
Atlas of Cancer Signalling NetworkLRRC47
Wikipedia pathwaysLRRC47
Orthology - Evolution
OrthoDB57470
Phylogenetic Trees/Animal Genes : TreeFamLRRC47
HOVERGENQ8N1G4
HOGENOMQ8N1G4
Homologs : HomoloGeneLRRC47
Homology/Alignments : Family Browser (UCSC)LRRC47
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC47
dbVarLRRC47
ClinVarLRRC47
1000_GenomesLRRC47 
Exome Variant ServerLRRC47
ExAC (Exome Aggregation Consortium)LRRC47 (select the gene name)
Genetic variants : HAPMAP57470
Genomic Variants (DGV)LRRC47 [DGVbeta]
DECIPHER (Syndromes)1:3696784-3713068  
CONAN: Copy Number AnalysisLRRC47 
Mutations
ICGC Data PortalLRRC47 
TCGA Data PortalLRRC47 
Broad Tumor PortalLRRC47
OASIS PortalLRRC47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC47  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC47
BioMutasearch LRRC47
DgiDB (Drug Gene Interaction Database)LRRC47
DoCM (Curated mutations)LRRC47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC47 (select a term)
intoGenLRRC47
Cancer3DLRRC47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC47
Genetic Testing Registry LRRC47
NextProtQ8N1G4 [Medical]
TSGene57470
GENETestsLRRC47
Huge Navigator LRRC47 [HugePedia]
snp3D : Map Gene to Disease57470
BioCentury BCIQLRRC47
ClinGenLRRC47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57470
Chemical/Pharm GKB GenePA142671507
Clinical trialLRRC47
Miscellaneous
canSAR (ICR)LRRC47 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC47
EVEXLRRC47
GoPubMedLRRC47
iHOPLRRC47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:08 CET 2017

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