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LRRC49 (leucine rich repeat containing 49)

Identity

Alias_symbol (synonym)FLJ20156
Other aliasPGs4
HGNC (Hugo) LRRC49
LocusID (NCBI) 54839
Atlas_Id 68633
Location 15q23  [Link to chromosome band 15q23]
Location_base_pair Starts at 71184782 and ends at 71342436 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
THSD4 (15q23) / LRRC49 (15q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC49   25965
Cards
Entrez_Gene (NCBI)LRRC49  54839  leucine rich repeat containing 49
AliasesPGs4
GeneCards (Weizmann)LRRC49
Ensembl hg19 (Hinxton)ENSG00000137821 [Gene_View]  chr15:71184782-71342436 [Contig_View]  LRRC49 [Vega]
Ensembl hg38 (Hinxton)ENSG00000137821 [Gene_View]  chr15:71184782-71342436 [Contig_View]  LRRC49 [Vega]
ICGC DataPortalENSG00000137821
TCGA cBioPortalLRRC49
AceView (NCBI)LRRC49
Genatlas (Paris)LRRC49
WikiGenes54839
SOURCE (Princeton)LRRC49
Genetics Home Reference (NIH)LRRC49
Genomic and cartography
GoldenPath hg19 (UCSC)LRRC49  -     chr15:71184782-71342436 +  15q23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LRRC49  -     15q23   [Description]    (hg38-Dec_2013)
EnsemblLRRC49 - 15q23 [CytoView hg19]  LRRC49 - 15q23 [CytoView hg38]
Mapping of homologs : NCBILRRC49 [Mapview hg19]  LRRC49 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000163 AK097752 AK123672 AK125732 AK225137
RefSeq transcript (Entrez)NM_001199017 NM_001199018 NM_001284357 NM_017691
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)LRRC49
Cluster EST : UnigeneHs.12692 [ NCBI ]
CGAP (NCI)Hs.12692
Alternative Splicing GalleryENSG00000137821
Gene ExpressionLRRC49 [ NCBI-GEO ]   LRRC49 [ EBI - ARRAY_EXPRESS ]   LRRC49 [ SEEK ]   LRRC49 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC49 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54839
GTEX Portal (Tissue expression)LRRC49
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUZ0
Splice isoforms : SwissVarQ8IUZ0
PhosPhoSitePlusQ8IUZ0
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Leu-rich_rpt    Leu-rich_rpt_4   
Domain families : Pfam (Sanger)LRR_4 (PF12799)   
Domain families : Pfam (NCBI)pfam12799   
Conserved Domain (NCBI)LRRC49
DMDM Disease mutations54839
Blocks (Seattle)LRRC49
SuperfamilyQ8IUZ0
Human Protein AtlasENSG00000137821
Peptide AtlasQ8IUZ0
HPRD07880
IPIIPI00794335   IPI01010747   IPI00292794   IPI00979285   IPI00953963   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUZ0
IntAct (EBI)Q8IUZ0
FunCoupENSG00000137821
BioGRIDLRRC49
STRING (EMBL)LRRC49
ZODIACLRRC49
Ontologies - Pathways
QuickGOQ8IUZ0
Ontology : AmiGOcytoplasm  microtubule  
Ontology : EGO-EBIcytoplasm  microtubule  
NDEx NetworkLRRC49
Atlas of Cancer Signalling NetworkLRRC49
Wikipedia pathwaysLRRC49
Orthology - Evolution
OrthoDB54839
GeneTree (enSembl)ENSG00000137821
Phylogenetic Trees/Animal Genes : TreeFamLRRC49
HOVERGENQ8IUZ0
HOGENOMQ8IUZ0
Homologs : HomoloGeneLRRC49
Homology/Alignments : Family Browser (UCSC)LRRC49
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC49 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC49
dbVarLRRC49
ClinVarLRRC49
1000_GenomesLRRC49 
Exome Variant ServerLRRC49
ExAC (Exome Aggregation Consortium)LRRC49 (select the gene name)
Genetic variants : HAPMAP54839
Genomic Variants (DGV)LRRC49 [DGVbeta]
DECIPHER (Syndromes)15:71184782-71342436  ENSG00000137821
CONAN: Copy Number AnalysisLRRC49 
Mutations
ICGC Data PortalLRRC49 
TCGA Data PortalLRRC49 
Broad Tumor PortalLRRC49
OASIS PortalLRRC49 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC49  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC49
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC49
DgiDB (Drug Gene Interaction Database)LRRC49
DoCM (Curated mutations)LRRC49 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC49 (select a term)
intoGenLRRC49
Cancer3DLRRC49(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC49
Genetic Testing Registry LRRC49
NextProtQ8IUZ0 [Medical]
TSGene54839
GENETestsLRRC49
Huge Navigator LRRC49 [HugePedia]
snp3D : Map Gene to Disease54839
BioCentury BCIQLRRC49
ClinGenLRRC49
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54839
Chemical/Pharm GKB GenePA142671509
Clinical trialLRRC49
Miscellaneous
canSAR (ICR)LRRC49 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC49
EVEXLRRC49
GoPubMedLRRC49
iHOPLRRC49
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:08 CET 2017

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