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LRRC52 (leucine rich repeat containing 52)

Identity

Alias_symbol (synonym)FLJ25811
Other alias-
HGNC (Hugo) LRRC52
LocusID (NCBI) 440699
Atlas_Id 68636
Location 1q24.1  [Link to chromosome band 1q24]
Location_base_pair Starts at 165513478 and ends at 165533185 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NOS1AP (1q23.3) / LRRC52 (1q24.1)PBX1 (1q23.3) / LRRC52 (1q24.1)NOS1AP LRRC52
PBX1 LRRC52

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC52   32156
Cards
Entrez_Gene (NCBI)LRRC52  440699  leucine rich repeat containing 52
Aliases
GeneCards (Weizmann)LRRC52
Ensembl hg19 (Hinxton)ENSG00000162763 [Gene_View]  chr1:165513478-165533185 [Contig_View]  LRRC52 [Vega]
Ensembl hg38 (Hinxton)ENSG00000162763 [Gene_View]  chr1:165513478-165533185 [Contig_View]  LRRC52 [Vega]
ICGC DataPortalENSG00000162763
TCGA cBioPortalLRRC52
AceView (NCBI)LRRC52
Genatlas (Paris)LRRC52
WikiGenes440699
SOURCE (Princeton)LRRC52
Genetics Home Reference (NIH)LRRC52
Genomic and cartography
GoldenPath hg19 (UCSC)LRRC52  -     chr1:165513478-165533185 +  1q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LRRC52  -     1q24.1   [Description]    (hg38-Dec_2013)
EnsemblLRRC52 - 1q24.1 [CytoView hg19]  LRRC52 - 1q24.1 [CytoView hg38]
Mapping of homologs : NCBILRRC52 [Mapview hg19]  LRRC52 [Mapview hg38]
OMIM615218   
Gene and transcription
Genbank (Entrez)AA725678 AK098677 BC132981 BC132983
RefSeq transcript (Entrez)NM_001005214
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)LRRC52
Cluster EST : UnigeneHs.664975 [ NCBI ]
CGAP (NCI)Hs.664975
Alternative Splicing GalleryENSG00000162763
Gene ExpressionLRRC52 [ NCBI-GEO ]   LRRC52 [ EBI - ARRAY_EXPRESS ]   LRRC52 [ SEEK ]   LRRC52 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC52 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440699
GTEX Portal (Tissue expression)LRRC52
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7C0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7C0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7C0
Splice isoforms : SwissVarQ8N7C0
PhosPhoSitePlusQ8N7C0
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Leu-rich_rpt    LRR-contain_N   
Domain families : Pfam (Sanger)LRR_1 (PF00560)    LRR_8 (PF13855)    LRRNT (PF01462)   
Domain families : Pfam (NCBI)pfam00560    pfam13855    pfam01462   
Domain families : Smart (EMBL)LRRNT (SM00013)  
Conserved Domain (NCBI)LRRC52
DMDM Disease mutations440699
Blocks (Seattle)LRRC52
SuperfamilyQ8N7C0
Human Protein AtlasENSG00000162763
Peptide AtlasQ8N7C0
HPRD13396
IPIIPI00297687   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7C0
IntAct (EBI)Q8N7C0
FunCoupENSG00000162763
BioGRIDLRRC52
STRING (EMBL)LRRC52
ZODIACLRRC52
Ontologies - Pathways
QuickGOQ8N7C0
Ontology : AmiGOplasma membrane  ion transport  integral component of membrane  
Ontology : EGO-EBIplasma membrane  ion transport  integral component of membrane  
NDEx NetworkLRRC52
Atlas of Cancer Signalling NetworkLRRC52
Wikipedia pathwaysLRRC52
Orthology - Evolution
OrthoDB440699
GeneTree (enSembl)ENSG00000162763
Phylogenetic Trees/Animal Genes : TreeFamLRRC52
HOVERGENQ8N7C0
HOGENOMQ8N7C0
Homologs : HomoloGeneLRRC52
Homology/Alignments : Family Browser (UCSC)LRRC52
Gene fusions - Rearrangements
Fusion: TCGANOS1AP LRRC52
Fusion: TCGAPBX1 LRRC52
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC52 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC52
dbVarLRRC52
ClinVarLRRC52
1000_GenomesLRRC52 
Exome Variant ServerLRRC52
ExAC (Exome Aggregation Consortium)LRRC52 (select the gene name)
Genetic variants : HAPMAP440699
Genomic Variants (DGV)LRRC52 [DGVbeta]
DECIPHER (Syndromes)1:165513478-165533185  ENSG00000162763
CONAN: Copy Number AnalysisLRRC52 
Mutations
ICGC Data PortalLRRC52 
TCGA Data PortalLRRC52 
Broad Tumor PortalLRRC52
OASIS PortalLRRC52 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC52  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC52
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRRC52
DgiDB (Drug Gene Interaction Database)LRRC52
DoCM (Curated mutations)LRRC52 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC52 (select a term)
intoGenLRRC52
Cancer3DLRRC52(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615218   
Orphanet
MedgenLRRC52
Genetic Testing Registry LRRC52
NextProtQ8N7C0 [Medical]
TSGene440699
GENETestsLRRC52
Huge Navigator LRRC52 [HugePedia]
snp3D : Map Gene to Disease440699
BioCentury BCIQLRRC52
ClinGenLRRC52
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440699
Chemical/Pharm GKB GenePA142671512
Clinical trialLRRC52
Miscellaneous
canSAR (ICR)LRRC52 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC52
EVEXLRRC52
GoPubMedLRRC52
iHOPLRRC52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:09 CET 2017

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