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LRRC55 (leucine rich repeat containing 55)

Identity

Alias_symbol (synonym)FLJ45686
Other alias-
HGNC (Hugo) LRRC55
LocusID (NCBI) 219527
Atlas_Id 68637
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 57181747 and ends at 57191714 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC55   32324
Cards
Entrez_Gene (NCBI)LRRC55  219527  leucine rich repeat containing 55
Aliases
GeneCards (Weizmann)LRRC55
Ensembl hg19 (Hinxton)ENSG00000183908 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183908 [Gene_View]  chr11:57181747-57191714 [Contig_View]  LRRC55 [Vega]
ICGC DataPortalENSG00000183908
TCGA cBioPortalLRRC55
AceView (NCBI)LRRC55
Genatlas (Paris)LRRC55
WikiGenes219527
SOURCE (Princeton)LRRC55
Genetics Home Reference (NIH)LRRC55
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC55  -     chr11:57181747-57191714 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC55  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblLRRC55 - 11q12.1 [CytoView hg19]  LRRC55 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBILRRC55 [Mapview hg19]  LRRC55 [Mapview hg38]
OMIM615213   
Gene and transcription
Genbank (Entrez)AK023401 AK127591 AL832845 BC136737 BC136739
RefSeq transcript (Entrez)NM_001005210
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC55
Cluster EST : UnigeneHs.199853 [ NCBI ]
CGAP (NCI)Hs.199853
Alternative Splicing GalleryENSG00000183908
Gene ExpressionLRRC55 [ NCBI-GEO ]   LRRC55 [ EBI - ARRAY_EXPRESS ]   LRRC55 [ SEEK ]   LRRC55 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC55 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219527
GTEX Portal (Tissue expression)LRRC55
Human Protein AtlasENSG00000183908-LRRC55 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSA7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZSA7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZSA7
Splice isoforms : SwissVarQ6ZSA7
PhosPhoSitePlusQ6ZSA7
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRRNT   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  LRRNT (SM00013)  
Conserved Domain (NCBI)LRRC55
DMDM Disease mutations219527
Blocks (Seattle)LRRC55
SuperfamilyQ6ZSA7
Human Protein Atlas [tissue]ENSG00000183908-LRRC55 [tissue]
Peptide AtlasQ6ZSA7
HPRD16990
IPIIPI00140246   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSA7
IntAct (EBI)Q6ZSA7
FunCoupENSG00000183908
BioGRIDLRRC55
STRING (EMBL)LRRC55
ZODIACLRRC55
Ontologies - Pathways
QuickGOQ6ZSA7
Ontology : AmiGOproteinaceous extracellular matrix  extracellular space  plasma membrane  ion transport  axonogenesis  integral component of membrane  
Ontology : EGO-EBIproteinaceous extracellular matrix  extracellular space  plasma membrane  ion transport  axonogenesis  integral component of membrane  
NDEx NetworkLRRC55
Atlas of Cancer Signalling NetworkLRRC55
Wikipedia pathwaysLRRC55
Orthology - Evolution
OrthoDB219527
GeneTree (enSembl)ENSG00000183908
Phylogenetic Trees/Animal Genes : TreeFamLRRC55
HOVERGENQ6ZSA7
HOGENOMQ6ZSA7
Homologs : HomoloGeneLRRC55
Homology/Alignments : Family Browser (UCSC)LRRC55
Gene fusions - Rearrangements
Tumor Fusion PortalLRRC55
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC55 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC55
dbVarLRRC55
ClinVarLRRC55
1000_GenomesLRRC55 
Exome Variant ServerLRRC55
ExAC (Exome Aggregation Consortium)ENSG00000183908
GNOMAD BrowserENSG00000183908
Genetic variants : HAPMAP219527
Genomic Variants (DGV)LRRC55 [DGVbeta]
DECIPHERLRRC55 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC55 
Mutations
ICGC Data PortalLRRC55 
TCGA Data PortalLRRC55 
Broad Tumor PortalLRRC55
OASIS PortalLRRC55 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC55  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC55
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRRC55
DgiDB (Drug Gene Interaction Database)LRRC55
DoCM (Curated mutations)LRRC55 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC55 (select a term)
intoGenLRRC55
Cancer3DLRRC55(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615213   
Orphanet
DisGeNETLRRC55
MedgenLRRC55
Genetic Testing Registry LRRC55
NextProtQ6ZSA7 [Medical]
TSGene219527
GENETestsLRRC55
Target ValidationLRRC55
Huge Navigator LRRC55 [HugePedia]
snp3D : Map Gene to Disease219527
BioCentury BCIQLRRC55
ClinGenLRRC55
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219527
Chemical/Pharm GKB GenePA142671514
Clinical trialLRRC55
Miscellaneous
canSAR (ICR)LRRC55 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC55
EVEXLRRC55
GoPubMedLRRC55
iHOPLRRC55
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:23:48 CET 2017

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