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LRRC56 (leucine rich repeat containing 56)

Identity

Alias_symbol (synonym)FLJ00101
DKFZp761L1518
Other alias-
HGNC (Hugo) LRRC56
LocusID (NCBI) 115399
Atlas_Id 68638
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 537522 and ends at 554916 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PHRF1 (11p15.5) / LRRC56 (11p15.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC56   25430
Cards
Entrez_Gene (NCBI)LRRC56  115399  leucine rich repeat containing 56
Aliases
GeneCards (Weizmann)LRRC56
Ensembl hg19 (Hinxton)ENSG00000161328 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161328 [Gene_View]  chr11:537522-554916 [Contig_View]  LRRC56 [Vega]
ICGC DataPortalENSG00000161328
TCGA cBioPortalLRRC56
AceView (NCBI)LRRC56
Genatlas (Paris)LRRC56
WikiGenes115399
SOURCE (Princeton)LRRC56
Genetics Home Reference (NIH)LRRC56
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC56  -     chr11:537522-554916 +  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC56  -     11p15.5   [Description]    (hg19-Feb_2009)
EnsemblLRRC56 - 11p15.5 [CytoView hg19]  LRRC56 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBILRRC56 [Mapview hg19]  LRRC56 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024495 AL831961 BC016439 BC035936 BC035937
RefSeq transcript (Entrez)NM_198075
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_187586
Consensus coding sequences : CCDS (NCBI)LRRC56
Cluster EST : UnigeneHs.567655 [ NCBI ]
CGAP (NCI)Hs.567655
Alternative Splicing GalleryENSG00000161328
Gene ExpressionLRRC56 [ NCBI-GEO ]   LRRC56 [ EBI - ARRAY_EXPRESS ]   LRRC56 [ SEEK ]   LRRC56 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC56 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115399
GTEX Portal (Tissue expression)LRRC56
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYG6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYG6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYG6
Splice isoforms : SwissVarQ8IYG6
PhosPhoSitePlusQ8IYG6
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LRRC56
DMDM Disease mutations115399
Blocks (Seattle)LRRC56
SuperfamilyQ8IYG6
Human Protein AtlasENSG00000161328
Peptide AtlasQ8IYG6
HPRD13227
IPIIPI00333126   IPI00025424   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYG6
IntAct (EBI)Q8IYG6
FunCoupENSG00000161328
BioGRIDLRRC56
STRING (EMBL)LRRC56
ZODIACLRRC56
Ontologies - Pathways
QuickGOQ8IYG6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC56
Atlas of Cancer Signalling NetworkLRRC56
Wikipedia pathwaysLRRC56
Orthology - Evolution
OrthoDB115399
GeneTree (enSembl)ENSG00000161328
Phylogenetic Trees/Animal Genes : TreeFamLRRC56
HOVERGENQ8IYG6
HOGENOMQ8IYG6
Homologs : HomoloGeneLRRC56
Homology/Alignments : Family Browser (UCSC)LRRC56
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC56 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC56
dbVarLRRC56
ClinVarLRRC56
1000_GenomesLRRC56 
Exome Variant ServerLRRC56
ExAC (Exome Aggregation Consortium)LRRC56 (select the gene name)
Genetic variants : HAPMAP115399
Genomic Variants (DGV)LRRC56 [DGVbeta]
DECIPHERLRRC56 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC56 
Mutations
ICGC Data PortalLRRC56 
TCGA Data PortalLRRC56 
Broad Tumor PortalLRRC56
OASIS PortalLRRC56 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC56  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC56
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC56
DgiDB (Drug Gene Interaction Database)LRRC56
DoCM (Curated mutations)LRRC56 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC56 (select a term)
intoGenLRRC56
Cancer3DLRRC56(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC56
Genetic Testing Registry LRRC56
NextProtQ8IYG6 [Medical]
TSGene115399
GENETestsLRRC56
Target ValidationLRRC56
Huge Navigator LRRC56 [HugePedia]
snp3D : Map Gene to Disease115399
BioCentury BCIQLRRC56
ClinGenLRRC56
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115399
Chemical/Pharm GKB GenePA142671515
Clinical trialLRRC56
Miscellaneous
canSAR (ICR)LRRC56 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC56
EVEXLRRC56
GoPubMedLRRC56
iHOPLRRC56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:33 CEST 2017

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