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LRRC56 (leucine rich repeat containing 56)

Identity

Alias (NCBI)CILD39
HGNC (Hugo) LRRC56
HGNC Alias symbFLJ00101
DKFZp761L1518
LocusID (NCBI) 115399
Atlas_Id 68638
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 537522 and ends at 554916 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PHRF1 (11p15.5) / LRRC56 (11p15.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  PHRF1/LRRC56 (11p15)


External links

Nomenclature
HGNC (Hugo)LRRC56   25430
Cards
Entrez_Gene (NCBI)LRRC56    leucine rich repeat containing 56
AliasesCILD39
GeneCards (Weizmann)LRRC56
Ensembl hg19 (Hinxton)ENSG00000161328 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161328 [Gene_View]  ENSG00000161328 [Sequence]  chr11:537522-554916 [Contig_View]  LRRC56 [Vega]
ICGC DataPortalENSG00000161328
TCGA cBioPortalLRRC56
AceView (NCBI)LRRC56
Genatlas (Paris)LRRC56
SOURCE (Princeton)LRRC56
Genetics Home Reference (NIH)LRRC56
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC56  -     chr11:537522-554916 +  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC56  -     11p15.5   [Description]    (hg19-Feb_2009)
GoldenPathLRRC56 - 11p15.5 [CytoView hg19]  LRRC56 - 11p15.5 [CytoView hg38]
ImmunoBaseENSG00000161328
genome Data Viewer NCBILRRC56 [Mapview hg19]  
OMIM618227   618254   
Gene and transcription
Genbank (Entrez)AK024495 AL831961 BC016439 BC035936 BC035937
RefSeq transcript (Entrez)NM_198075
RefSeq genomic (Entrez)NC_000011 NT_187586
Consensus coding sequences : CCDS (NCBI)LRRC56
Alternative Splicing GalleryENSG00000161328
Gene ExpressionLRRC56 [ NCBI-GEO ]   LRRC56 [ EBI - ARRAY_EXPRESS ]   LRRC56 [ SEEK ]   LRRC56 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC56 [ Firebrowse - Broad ]
GenevisibleExpression of LRRC56 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115399
GTEX Portal (Tissue expression)LRRC56
Human Protein AtlasENSG00000161328-LRRC56 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYG6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYG6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYG6
Splice isoforms : SwissVarQ8IYG6
PhosPhoSitePlusQ8IYG6
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Leu-rich_rpt    LRR_dom_sf    LRRC56   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LRRC56
Blocks (Seattle)LRRC56
SuperfamilyQ8IYG6
Human Protein Atlas [tissue]ENSG00000161328-LRRC56 [tissue]
Peptide AtlasQ8IYG6
HPRD13227
IPIIPI00333126   IPI00025424   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYG6
IntAct (EBI)Q8IYG6
BioGRIDLRRC56
STRING (EMBL)LRRC56
ZODIACLRRC56
Ontologies - Pathways
QuickGOQ8IYG6
Ontology : AmiGOprotein binding  cilium  cell projection organization  
Ontology : EGO-EBIprotein binding  cilium  cell projection organization  
NDEx NetworkLRRC56
Atlas of Cancer Signalling NetworkLRRC56
Wikipedia pathwaysLRRC56
Orthology - Evolution
OrthoDB115399
GeneTree (enSembl)ENSG00000161328
Phylogenetic Trees/Animal Genes : TreeFamLRRC56
HOGENOMQ8IYG6
Homologs : HomoloGeneLRRC56
Homology/Alignments : Family Browser (UCSC)LRRC56
Gene fusions - Rearrangements
Fusion : QuiverLRRC56
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC56 [hg38]
dbVarLRRC56
ClinVarLRRC56
MonarchLRRC56
1000_GenomesLRRC56 
Exome Variant ServerLRRC56
GNOMAD BrowserENSG00000161328
Varsome BrowserLRRC56
Genomic Variants (DGV)LRRC56 [DGVbeta]
DECIPHERLRRC56 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC56 
Mutations
ICGC Data PortalLRRC56 
TCGA Data PortalLRRC56 
Broad Tumor PortalLRRC56
OASIS PortalLRRC56 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC56  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLRRC56
Mutations and Diseases : HGMDLRRC56
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC56
DgiDB (Drug Gene Interaction Database)LRRC56
DoCM (Curated mutations)LRRC56 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC56 (select a term)
intoGenLRRC56
Cancer3DLRRC56(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618227    618254   
Orphanet
DisGeNETLRRC56
MedgenLRRC56
Genetic Testing Registry LRRC56
NextProtQ8IYG6 [Medical]
GENETestsLRRC56
Target ValidationLRRC56
Huge Navigator LRRC56 [HugePedia]
ClinGenLRRC56
Clinical trials, drugs, therapy
MyCancerGenomeLRRC56
Protein Interactions : CTD
Pharm GKB GenePA142671515
Clinical trialLRRC56
Miscellaneous
canSAR (ICR)LRRC56 (select the gene name)
HarmonizomeLRRC56
DataMed IndexLRRC56
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC56
EVEXLRRC56
GoPubMedLRRC56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:12:13 CET 2020

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