Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LRRC57 (leucine rich repeat containing 57)

Identity

Alias_symbol (synonym)FLJ36812
Other alias-
HGNC (Hugo) LRRC57
LocusID (NCBI) 255252
Atlas_Id 68639
Location 15q15.2  [Link to chromosome band 15q15]
Location_base_pair Starts at 42542522 and ends at 42548804 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KMT2A (11q23.3) / LRRC57 (15q15.2)LRRC57 (15q15.2) / LRRC57 (15q15.2)NUDT4 (12q22) / LRRC57 (15q15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC57   26719
Cards
Entrez_Gene (NCBI)LRRC57  255252  leucine rich repeat containing 57
Aliases
GeneCards (Weizmann)LRRC57
Ensembl hg19 (Hinxton)ENSG00000180979 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180979 [Gene_View]  chr15:42542522-42548804 [Contig_View]  LRRC57 [Vega]
ICGC DataPortalENSG00000180979
TCGA cBioPortalLRRC57
AceView (NCBI)LRRC57
Genatlas (Paris)LRRC57
WikiGenes255252
SOURCE (Princeton)LRRC57
Genetics Home Reference (NIH)LRRC57
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC57  -     chr15:42542522-42548804 -  15q15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC57  -     15q15.2   [Description]    (hg19-Feb_2009)
EnsemblLRRC57 - 15q15.2 [CytoView hg19]  LRRC57 - 15q15.2 [CytoView hg38]
Mapping of homologs : NCBILRRC57 [Mapview hg19]  LRRC57 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF087994 AK094131 AK094891 AK309861 BC051262
RefSeq transcript (Entrez)NM_153260
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC57
Cluster EST : UnigeneHs.234681 [ NCBI ]
CGAP (NCI)Hs.234681
Alternative Splicing GalleryENSG00000180979
Gene ExpressionLRRC57 [ NCBI-GEO ]   LRRC57 [ EBI - ARRAY_EXPRESS ]   LRRC57 [ SEEK ]   LRRC57 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC57 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255252
GTEX Portal (Tissue expression)LRRC57
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9N7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9N7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9N7
Splice isoforms : SwissVarQ8N9N7
PhosPhoSitePlusQ8N9N7
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_1 (PF00560)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam00560    pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC57
DMDM Disease mutations255252
Blocks (Seattle)LRRC57
SuperfamilyQ8N9N7
Human Protein AtlasENSG00000180979
Peptide AtlasQ8N9N7
HPRD08212
IPIIPI00470576   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9N7
IntAct (EBI)Q8N9N7
FunCoupENSG00000180979
BioGRIDLRRC57
STRING (EMBL)LRRC57
ZODIACLRRC57
Ontologies - Pathways
QuickGOQ8N9N7
Ontology : AmiGOmembrane  extracellular exosome  
Ontology : EGO-EBImembrane  extracellular exosome  
NDEx NetworkLRRC57
Atlas of Cancer Signalling NetworkLRRC57
Wikipedia pathwaysLRRC57
Orthology - Evolution
OrthoDB255252
GeneTree (enSembl)ENSG00000180979
Phylogenetic Trees/Animal Genes : TreeFamLRRC57
HOVERGENQ8N9N7
HOGENOMQ8N9N7
Homologs : HomoloGeneLRRC57
Homology/Alignments : Family Browser (UCSC)LRRC57
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC57 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC57
dbVarLRRC57
ClinVarLRRC57
1000_GenomesLRRC57 
Exome Variant ServerLRRC57
ExAC (Exome Aggregation Consortium)LRRC57 (select the gene name)
Genetic variants : HAPMAP255252
Genomic Variants (DGV)LRRC57 [DGVbeta]
DECIPHERLRRC57 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC57 
Mutations
ICGC Data PortalLRRC57 
TCGA Data PortalLRRC57 
Broad Tumor PortalLRRC57
OASIS PortalLRRC57 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC57  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC57
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC57
DgiDB (Drug Gene Interaction Database)LRRC57
DoCM (Curated mutations)LRRC57 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC57 (select a term)
intoGenLRRC57
Cancer3DLRRC57(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC57
Genetic Testing Registry LRRC57
NextProtQ8N9N7 [Medical]
TSGene255252
GENETestsLRRC57
Huge Navigator LRRC57 [HugePedia]
snp3D : Map Gene to Disease255252
BioCentury BCIQLRRC57
ClinGenLRRC57
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255252
Chemical/Pharm GKB GenePA142671516
Clinical trialLRRC57
Miscellaneous
canSAR (ICR)LRRC57 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC57
EVEXLRRC57
GoPubMedLRRC57
iHOPLRRC57
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:37:20 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.