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LRRC58 (leucine rich repeat containing 58)

Identity

Other alias-
HGNC (Hugo) LRRC58
LocusID (NCBI) 116064
Atlas_Id 68640
Location 3q13.33  [Link to chromosome band 3q13]
Location_base_pair Starts at 120324729 and ends at 120349339 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AHCYL1 (1p13.3) / LRRC58 (3q13.33)CYB561A3 (11q12.2) / LRRC58 (3q13.33)LRRC58 (3q13.33) / LRRC58 (3q13.33)
POLE3 (9q32) / LRRC58 (3q13.33)RNF24 (20p13) / LRRC58 (3q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC58   26968
Cards
Entrez_Gene (NCBI)LRRC58  116064  leucine rich repeat containing 58
Aliases
GeneCards (Weizmann)LRRC58
Ensembl hg19 (Hinxton)ENSG00000163428 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163428 [Gene_View]  chr3:120324729-120349339 [Contig_View]  LRRC58 [Vega]
ICGC DataPortalENSG00000163428
TCGA cBioPortalLRRC58
AceView (NCBI)LRRC58
Genatlas (Paris)LRRC58
WikiGenes116064
SOURCE (Princeton)LRRC58
Genetics Home Reference (NIH)LRRC58
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC58  -     chr3:120324729-120349339 -  3q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC58  -     3q13.33   [Description]    (hg19-Feb_2009)
EnsemblLRRC58 - 3q13.33 [CytoView hg19]  LRRC58 - 3q13.33 [CytoView hg38]
Mapping of homologs : NCBILRRC58 [Mapview hg19]  LRRC58 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056809 AM393236 BC013757
RefSeq transcript (Entrez)NM_001099678
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC58
Cluster EST : UnigeneHs.518084 [ NCBI ]
CGAP (NCI)Hs.518084
Alternative Splicing GalleryENSG00000163428
Gene ExpressionLRRC58 [ NCBI-GEO ]   LRRC58 [ EBI - ARRAY_EXPRESS ]   LRRC58 [ SEEK ]   LRRC58 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC58 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116064
GTEX Portal (Tissue expression)LRRC58
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CX6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CX6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CX6
Splice isoforms : SwissVarQ96CX6
PhosPhoSitePlusQ96CX6
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC58
DMDM Disease mutations116064
Blocks (Seattle)LRRC58
SuperfamilyQ96CX6
Human Protein AtlasENSG00000163428
Peptide AtlasQ96CX6
IPIIPI00856042   
Protein Interaction databases
DIP (DOE-UCLA)Q96CX6
IntAct (EBI)Q96CX6
FunCoupENSG00000163428
BioGRIDLRRC58
STRING (EMBL)LRRC58
ZODIACLRRC58
Ontologies - Pathways
QuickGOQ96CX6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC58
Atlas of Cancer Signalling NetworkLRRC58
Wikipedia pathwaysLRRC58
Orthology - Evolution
OrthoDB116064
GeneTree (enSembl)ENSG00000163428
Phylogenetic Trees/Animal Genes : TreeFamLRRC58
HOVERGENQ96CX6
HOGENOMQ96CX6
Homologs : HomoloGeneLRRC58
Homology/Alignments : Family Browser (UCSC)LRRC58
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC58 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC58
dbVarLRRC58
ClinVarLRRC58
1000_GenomesLRRC58 
Exome Variant ServerLRRC58
ExAC (Exome Aggregation Consortium)LRRC58 (select the gene name)
Genetic variants : HAPMAP116064
Genomic Variants (DGV)LRRC58 [DGVbeta]
DECIPHERLRRC58 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC58 
Mutations
ICGC Data PortalLRRC58 
TCGA Data PortalLRRC58 
Broad Tumor PortalLRRC58
OASIS PortalLRRC58 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC58  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC58
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC58
DgiDB (Drug Gene Interaction Database)LRRC58
DoCM (Curated mutations)LRRC58 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC58 (select a term)
intoGenLRRC58
Cancer3DLRRC58(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC58
Genetic Testing Registry LRRC58
NextProtQ96CX6 [Medical]
TSGene116064
GENETestsLRRC58
Target ValidationLRRC58
Huge Navigator LRRC58 [HugePedia]
snp3D : Map Gene to Disease116064
BioCentury BCIQLRRC58
ClinGenLRRC58
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116064
Chemical/Pharm GKB GenePA142671517
Clinical trialLRRC58
Miscellaneous
canSAR (ICR)LRRC58 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC58
EVEXLRRC58
GoPubMedLRRC58
iHOPLRRC58
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:24:57 CEST 2017

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