Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LRRC61 (leucine rich repeat containing 61)

Identity

Alias_symbol (synonym)MGC3036
FLJ31392
HSPC295
Other alias
HGNC (Hugo) LRRC61
LocusID (NCBI) 65999
Atlas_Id 68642
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 150020296 and ends at 150035245 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LINC00290 (4q34.3) / LRRC61 (7q36.1)LRRC61 (7q36.1) / PTPN13 (4q21.3)TAGLN (11q23.3) / LRRC61 (7q36.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC61   21704
Cards
Entrez_Gene (NCBI)LRRC61  65999  leucine rich repeat containing 61
AliasesHSPC295
GeneCards (Weizmann)LRRC61
Ensembl hg19 (Hinxton)ENSG00000127399 [Gene_View]  chr7:150020296-150035245 [Contig_View]  LRRC61 [Vega]
Ensembl hg38 (Hinxton)ENSG00000127399 [Gene_View]  chr7:150020296-150035245 [Contig_View]  LRRC61 [Vega]
ICGC DataPortalENSG00000127399
TCGA cBioPortalLRRC61
AceView (NCBI)LRRC61
Genatlas (Paris)LRRC61
WikiGenes65999
SOURCE (Princeton)LRRC61
Genetics Home Reference (NIH)LRRC61
Genomic and cartography
GoldenPath hg19 (UCSC)LRRC61  -     chr7:150020296-150035245 +  7q36.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LRRC61  -     7q36.1   [Description]    (hg38-Dec_2013)
EnsemblLRRC61 - 7q36.1 [CytoView hg19]  LRRC61 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBILRRC61 [Mapview hg19]  LRRC61 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161413 AK025869 AK055954 AK093915 AK098061
RefSeq transcript (Entrez)NM_001142928 NM_023942
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929333
Consensus coding sequences : CCDS (NCBI)LRRC61
Cluster EST : UnigeneHs.647119 [ NCBI ]
CGAP (NCI)Hs.647119
Alternative Splicing GalleryENSG00000127399
Gene ExpressionLRRC61 [ NCBI-GEO ]   LRRC61 [ EBI - ARRAY_EXPRESS ]   LRRC61 [ SEEK ]   LRRC61 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC61 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65999
GTEX Portal (Tissue expression)LRRC61
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BV99   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BV99  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BV99
Splice isoforms : SwissVarQ9BV99
PhosPhoSitePlusQ9BV99
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Leu-rich_rpt    Leu-rich_rpt_4   
Domain families : Pfam (Sanger)LRR_4 (PF12799)   
Domain families : Pfam (NCBI)pfam12799   
Conserved Domain (NCBI)LRRC61
DMDM Disease mutations65999
Blocks (Seattle)LRRC61
SuperfamilyQ9BV99
Human Protein AtlasENSG00000127399
Peptide AtlasQ9BV99
HPRD08326
IPIIPI00028418   IPI00000306   
Protein Interaction databases
DIP (DOE-UCLA)Q9BV99
IntAct (EBI)Q9BV99
FunCoupENSG00000127399
BioGRIDLRRC61
STRING (EMBL)LRRC61
ZODIACLRRC61
Ontologies - Pathways
QuickGOQ9BV99
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC61
Atlas of Cancer Signalling NetworkLRRC61
Wikipedia pathwaysLRRC61
Orthology - Evolution
OrthoDB65999
GeneTree (enSembl)ENSG00000127399
Phylogenetic Trees/Animal Genes : TreeFamLRRC61
HOVERGENQ9BV99
HOGENOMQ9BV99
Homologs : HomoloGeneLRRC61
Homology/Alignments : Family Browser (UCSC)LRRC61
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC61 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC61
dbVarLRRC61
ClinVarLRRC61
1000_GenomesLRRC61 
Exome Variant ServerLRRC61
ExAC (Exome Aggregation Consortium)LRRC61 (select the gene name)
Genetic variants : HAPMAP65999
Genomic Variants (DGV)LRRC61 [DGVbeta]
DECIPHER (Syndromes)7:150020296-150035245  ENSG00000127399
CONAN: Copy Number AnalysisLRRC61 
Mutations
ICGC Data PortalLRRC61 
TCGA Data PortalLRRC61 
Broad Tumor PortalLRRC61
OASIS PortalLRRC61 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC61  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC61
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRRC61
DgiDB (Drug Gene Interaction Database)LRRC61
DoCM (Curated mutations)LRRC61 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC61 (select a term)
intoGenLRRC61
Cancer3DLRRC61(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC61
Genetic Testing Registry LRRC61
NextProtQ9BV99 [Medical]
TSGene65999
GENETestsLRRC61
Huge Navigator LRRC61 [HugePedia]
snp3D : Map Gene to Disease65999
BioCentury BCIQLRRC61
ClinGenLRRC61
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65999
Chemical/Pharm GKB GenePA143485530
Clinical trialLRRC61
Miscellaneous
canSAR (ICR)LRRC61 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC61
EVEXLRRC61
GoPubMedLRRC61
iHOPLRRC61
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:27:10 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.