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LRRC63 (leucine rich repeat containing 63)

Identity

Alias_symbol (synonym)RP11-139H14.4
Other alias-
HGNC (Hugo) LRRC63
LocusID (NCBI) 220416
Atlas_Id 68643
Location 13q14.13  [Link to chromosome band 13q14]
Location_base_pair Starts at 46211943 and ends at 46276803 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC63   34296
Cards
Entrez_Gene (NCBI)LRRC63  220416  leucine rich repeat containing 63
Aliases
GeneCards (Weizmann)LRRC63
Ensembl hg19 (Hinxton)ENSG00000173988 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173988 [Gene_View]  chr13:46211943-46276803 [Contig_View]  LRRC63 [Vega]
ICGC DataPortalENSG00000173988
TCGA cBioPortalLRRC63
AceView (NCBI)LRRC63
Genatlas (Paris)LRRC63
WikiGenes220416
SOURCE (Princeton)LRRC63
Genetics Home Reference (NIH)LRRC63
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC63  -     chr13:46211943-46276803 +  13q14.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC63  -     13q14.13   [Description]    (hg19-Feb_2009)
EnsemblLRRC63 - 13q14.13 [CytoView hg19]  LRRC63 - 13q14.13 [CytoView hg38]
Mapping of homologs : NCBILRRC63 [Mapview hg19]  LRRC63 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC030276
RefSeq transcript (Entrez)NM_001024609 NM_001282460
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC63
Cluster EST : UnigeneHs.267765 [ NCBI ]
CGAP (NCI)Hs.267765
Alternative Splicing GalleryENSG00000173988
Gene ExpressionLRRC63 [ NCBI-GEO ]   LRRC63 [ EBI - ARRAY_EXPRESS ]   LRRC63 [ SEEK ]   LRRC63 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC63 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220416
GTEX Portal (Tissue expression)LRRC63
Human Protein AtlasENSG00000173988-LRRC63 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ05C16   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ05C16  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ05C16
Splice isoforms : SwissVarQ05C16
PhosPhoSitePlusQ05C16
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC63
DMDM Disease mutations220416
Blocks (Seattle)LRRC63
SuperfamilyQ05C16
Human Protein Atlas [tissue]ENSG00000173988-LRRC63 [tissue]
Peptide AtlasQ05C16
HPRD18580
IPIIPI00747499   
Protein Interaction databases
DIP (DOE-UCLA)Q05C16
IntAct (EBI)Q05C16
FunCoupENSG00000173988
BioGRIDLRRC63
STRING (EMBL)LRRC63
ZODIACLRRC63
Ontologies - Pathways
QuickGOQ05C16
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC63
Atlas of Cancer Signalling NetworkLRRC63
Wikipedia pathwaysLRRC63
Orthology - Evolution
OrthoDB220416
GeneTree (enSembl)ENSG00000173988
Phylogenetic Trees/Animal Genes : TreeFamLRRC63
HOVERGENQ05C16
HOGENOMQ05C16
Homologs : HomoloGeneLRRC63
Homology/Alignments : Family Browser (UCSC)LRRC63
Gene fusions - Rearrangements
Tumor Fusion PortalLRRC63
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC63 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC63
dbVarLRRC63
ClinVarLRRC63
1000_GenomesLRRC63 
Exome Variant ServerLRRC63
ExAC (Exome Aggregation Consortium)ENSG00000173988
GNOMAD BrowserENSG00000173988
Genetic variants : HAPMAP220416
Genomic Variants (DGV)LRRC63 [DGVbeta]
DECIPHERLRRC63 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC63 
Mutations
ICGC Data PortalLRRC63 
TCGA Data PortalLRRC63 
Broad Tumor PortalLRRC63
OASIS PortalLRRC63 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC63  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC63
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC63
DgiDB (Drug Gene Interaction Database)LRRC63
DoCM (Curated mutations)LRRC63 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC63 (select a term)
intoGenLRRC63
Cancer3DLRRC63(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLRRC63
MedgenLRRC63
Genetic Testing Registry LRRC63
NextProtQ05C16 [Medical]
TSGene220416
GENETestsLRRC63
Target ValidationLRRC63
Huge Navigator LRRC63 [HugePedia]
snp3D : Map Gene to Disease220416
BioCentury BCIQLRRC63
ClinGenLRRC63
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220416
Chemical/Pharm GKB GenePA162394565
Clinical trialLRRC63
Miscellaneous
canSAR (ICR)LRRC63 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC63
EVEXLRRC63
GoPubMedLRRC63
iHOPLRRC63
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:55:21 CET 2017

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