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LRRC66 (leucine rich repeat containing 66)

Identity

Other alias-
HGNC (Hugo) LRRC66
LocusID (NCBI) 339977
Atlas_Id 68644
Location 4q12  [Link to chromosome band 4q12]
Location_base_pair Starts at 52859866 and ends at 52883786 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AASDH (4q12) / LRRC66 (4q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC66   34299
Cards
Entrez_Gene (NCBI)LRRC66  339977  leucine rich repeat containing 66
Aliases
GeneCards (Weizmann)LRRC66
Ensembl hg19 (Hinxton)ENSG00000188993 [Gene_View]  chr4:52859866-52883786 [Contig_View]  LRRC66 [Vega]
Ensembl hg38 (Hinxton)ENSG00000188993 [Gene_View]  chr4:52859866-52883786 [Contig_View]  LRRC66 [Vega]
ICGC DataPortalENSG00000188993
TCGA cBioPortalLRRC66
AceView (NCBI)LRRC66
Genatlas (Paris)LRRC66
WikiGenes339977
SOURCE (Princeton)LRRC66
Genetics Home Reference (NIH)LRRC66
Genomic and cartography
GoldenPath hg19 (UCSC)LRRC66  -     chr4:52859866-52883786 -  4q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LRRC66  -     4q12   [Description]    (hg38-Dec_2013)
EnsemblLRRC66 - 4q12 [CytoView hg19]  LRRC66 - 4q12 [CytoView hg38]
Mapping of homologs : NCBILRRC66 [Mapview hg19]  LRRC66 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC040414 CR749811
RefSeq transcript (Entrez)NM_001024611
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_022853 NW_004929319
Consensus coding sequences : CCDS (NCBI)LRRC66
Cluster EST : UnigeneHs.661450 [ NCBI ]
CGAP (NCI)Hs.661450
Alternative Splicing GalleryENSG00000188993
Gene ExpressionLRRC66 [ NCBI-GEO ]   LRRC66 [ EBI - ARRAY_EXPRESS ]   LRRC66 [ SEEK ]   LRRC66 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC66 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339977
GTEX Portal (Tissue expression)LRRC66
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68CR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68CR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68CR7
Splice isoforms : SwissVarQ68CR7
PhosPhoSitePlusQ68CR7
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Leu-rich_rpt   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Conserved Domain (NCBI)LRRC66
DMDM Disease mutations339977
Blocks (Seattle)LRRC66
SuperfamilyQ68CR7
Human Protein AtlasENSG00000188993
Peptide AtlasQ68CR7
HPRD18593
IPIIPI00470812   
Protein Interaction databases
DIP (DOE-UCLA)Q68CR7
IntAct (EBI)Q68CR7
FunCoupENSG00000188993
BioGRIDLRRC66
STRING (EMBL)LRRC66
ZODIACLRRC66
Ontologies - Pathways
QuickGOQ68CR7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLRRC66
Atlas of Cancer Signalling NetworkLRRC66
Wikipedia pathwaysLRRC66
Orthology - Evolution
OrthoDB339977
GeneTree (enSembl)ENSG00000188993
Phylogenetic Trees/Animal Genes : TreeFamLRRC66
HOVERGENQ68CR7
HOGENOMQ68CR7
Homologs : HomoloGeneLRRC66
Homology/Alignments : Family Browser (UCSC)LRRC66
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC66 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC66
dbVarLRRC66
ClinVarLRRC66
1000_GenomesLRRC66 
Exome Variant ServerLRRC66
ExAC (Exome Aggregation Consortium)LRRC66 (select the gene name)
Genetic variants : HAPMAP339977
Genomic Variants (DGV)LRRC66 [DGVbeta]
DECIPHER (Syndromes)4:52859866-52883786  ENSG00000188993
CONAN: Copy Number AnalysisLRRC66 
Mutations
ICGC Data PortalLRRC66 
TCGA Data PortalLRRC66 
Broad Tumor PortalLRRC66
OASIS PortalLRRC66 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC66  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC66
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC66
DgiDB (Drug Gene Interaction Database)LRRC66
DoCM (Curated mutations)LRRC66 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC66 (select a term)
intoGenLRRC66
Cancer3DLRRC66(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC66
Genetic Testing Registry LRRC66
NextProtQ68CR7 [Medical]
TSGene339977
GENETestsLRRC66
Huge Navigator LRRC66 [HugePedia]
snp3D : Map Gene to Disease339977
BioCentury BCIQLRRC66
ClinGenLRRC66
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339977
Chemical/Pharm GKB GenePA162394587
Clinical trialLRRC66
Miscellaneous
canSAR (ICR)LRRC66 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC66
EVEXLRRC66
GoPubMedLRRC66
iHOPLRRC66
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:11 CET 2017

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