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LRRC70 (leucine rich repeat containing 70)

Identity

Alias_symbol (synonym)SLRN
LOC100130733
Other alias
HGNC (Hugo) LRRC70
LocusID (NCBI) 100130733
Atlas_Id 68647
Location 5q12.1  [Link to chromosome band 5q12]
Location_base_pair Starts at 62578735 and ends at 62581448 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC70   35155
Cards
Entrez_Gene (NCBI)LRRC70  100130733  leucine rich repeat containing 70
AliasesSLRN
GeneCards (Weizmann)LRRC70
Ensembl hg19 (Hinxton)ENSG00000186105 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186105 [Gene_View]  chr5:62578735-62581448 [Contig_View]  LRRC70 [Vega]
ICGC DataPortalENSG00000186105
TCGA cBioPortalLRRC70
AceView (NCBI)LRRC70
Genatlas (Paris)LRRC70
WikiGenes100130733
SOURCE (Princeton)LRRC70
Genetics Home Reference (NIH)LRRC70
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC70  -     chr5:62578735-62581448 +  5q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC70  -     5q12.1   [Description]    (hg19-Feb_2009)
EnsemblLRRC70 - 5q12.1 [CytoView hg19]  LRRC70 - 5q12.1 [CytoView hg38]
Mapping of homologs : NCBILRRC70 [Mapview hg19]  LRRC70 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123022 AY280614 AY358733 BC067275 BC110838
RefSeq transcript (Entrez)NM_181506
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC70
Cluster EST : UnigeneHs.721348 [ NCBI ]
CGAP (NCI)Hs.721348
Alternative Splicing GalleryENSG00000186105
Gene ExpressionLRRC70 [ NCBI-GEO ]   LRRC70 [ EBI - ARRAY_EXPRESS ]   LRRC70 [ SEEK ]   LRRC70 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC70 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130733
GTEX Portal (Tissue expression)LRRC70
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z2Q7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z2Q7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z2Q7
Splice isoforms : SwissVarQ7Z2Q7
PhosPhoSitePlusQ7Z2Q7
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  
Conserved Domain (NCBI)LRRC70
DMDM Disease mutations100130733
Blocks (Seattle)LRRC70
SuperfamilyQ7Z2Q7
Human Protein AtlasENSG00000186105
Peptide AtlasQ7Z2Q7
IPIIPI00884949   IPI00967146   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z2Q7
IntAct (EBI)Q7Z2Q7
FunCoupENSG00000186105
BioGRIDLRRC70
STRING (EMBL)LRRC70
ZODIACLRRC70
Ontologies - Pathways
QuickGOQ7Z2Q7
Ontology : AmiGOtoll-like receptor signaling pathway  response to molecule of bacterial origin  interleukin-1 receptor binding  proteinaceous extracellular matrix  extracellular space  plasma membrane  axonogenesis  integral component of membrane  
Ontology : EGO-EBItoll-like receptor signaling pathway  response to molecule of bacterial origin  interleukin-1 receptor binding  proteinaceous extracellular matrix  extracellular space  plasma membrane  axonogenesis  integral component of membrane  
NDEx NetworkLRRC70
Atlas of Cancer Signalling NetworkLRRC70
Wikipedia pathwaysLRRC70
Orthology - Evolution
OrthoDB100130733
GeneTree (enSembl)ENSG00000186105
Phylogenetic Trees/Animal Genes : TreeFamLRRC70
HOVERGENQ7Z2Q7
HOGENOMQ7Z2Q7
Homologs : HomoloGeneLRRC70
Homology/Alignments : Family Browser (UCSC)LRRC70
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC70 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC70
dbVarLRRC70
ClinVarLRRC70
1000_GenomesLRRC70 
Exome Variant ServerLRRC70
ExAC (Exome Aggregation Consortium)LRRC70 (select the gene name)
Genetic variants : HAPMAP100130733
Genomic Variants (DGV)LRRC70 [DGVbeta]
DECIPHERLRRC70 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC70 
Mutations
ICGC Data PortalLRRC70 
TCGA Data PortalLRRC70 
Broad Tumor PortalLRRC70
OASIS PortalLRRC70 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC70  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC70
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRRC70
DgiDB (Drug Gene Interaction Database)LRRC70
DoCM (Curated mutations)LRRC70 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC70 (select a term)
intoGenLRRC70
Cancer3DLRRC70(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC70
Genetic Testing Registry LRRC70
NextProtQ7Z2Q7 [Medical]
TSGene100130733
GENETestsLRRC70
Target ValidationLRRC70
Huge Navigator LRRC70 [HugePedia]
snp3D : Map Gene to Disease100130733
BioCentury BCIQLRRC70
ClinGenLRRC70
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130733
Chemical/Pharm GKB GenePA164722127
Clinical trialLRRC70
Miscellaneous
canSAR (ICR)LRRC70 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC70
EVEXLRRC70
GoPubMedLRRC70
iHOPLRRC70
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:35 CEST 2017

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