Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LRRC71 (leucine rich repeat containing 71)

Identity

Alias_namesC1orf92
chromosome 1 open reading frame 92
Alias_symbol (synonym)FLJ32884
Other alias
HGNC (Hugo) LRRC71
LocusID (NCBI) 149499
Atlas_Id 68648
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 156920632 and ends at 156933088 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC71   26556
Cards
Entrez_Gene (NCBI)LRRC71  149499  leucine rich repeat containing 71
AliasesC1orf92
GeneCards (Weizmann)LRRC71
Ensembl hg19 (Hinxton)ENSG00000160838 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160838 [Gene_View]  chr1:156920632-156933088 [Contig_View]  LRRC71 [Vega]
ICGC DataPortalENSG00000160838
TCGA cBioPortalLRRC71
AceView (NCBI)LRRC71
Genatlas (Paris)LRRC71
WikiGenes149499
SOURCE (Princeton)LRRC71
Genetics Home Reference (NIH)LRRC71
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC71  -     chr1:156920632-156933088 +  1q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC71  -     1q23.1   [Description]    (hg19-Feb_2009)
EnsemblLRRC71 - 1q23.1 [CytoView hg19]  LRRC71 - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBILRRC71 [Mapview hg19]  LRRC71 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057446 AK292342 BC033790 BU689904
RefSeq transcript (Entrez)NM_144702
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC71
Cluster EST : UnigeneHs.491734 [ NCBI ]
CGAP (NCI)Hs.491734
Alternative Splicing GalleryENSG00000160838
Gene ExpressionLRRC71 [ NCBI-GEO ]   LRRC71 [ EBI - ARRAY_EXPRESS ]   LRRC71 [ SEEK ]   LRRC71 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC71 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149499
GTEX Portal (Tissue expression)LRRC71
Human Protein AtlasENSG00000160838-LRRC71 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4P6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4P6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4P6
Splice isoforms : SwissVarQ8N4P6
PhosPhoSitePlusQ8N4P6
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt   
Domain families : Pfam (Sanger)LRR_6 (PF13516)   
Domain families : Pfam (NCBI)pfam13516   
Conserved Domain (NCBI)LRRC71
DMDM Disease mutations149499
Blocks (Seattle)LRRC71
SuperfamilyQ8N4P6
Human Protein Atlas [tissue]ENSG00000160838-LRRC71 [tissue]
Peptide AtlasQ8N4P6
HPRD08737
IPIIPI00395907   IPI00845346   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4P6
IntAct (EBI)Q8N4P6
FunCoupENSG00000160838
BioGRIDLRRC71
STRING (EMBL)LRRC71
ZODIACLRRC71
Ontologies - Pathways
QuickGOQ8N4P6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC71
Atlas of Cancer Signalling NetworkLRRC71
Wikipedia pathwaysLRRC71
Orthology - Evolution
OrthoDB149499
GeneTree (enSembl)ENSG00000160838
Phylogenetic Trees/Animal Genes : TreeFamLRRC71
HOVERGENQ8N4P6
HOGENOMQ8N4P6
Homologs : HomoloGeneLRRC71
Homology/Alignments : Family Browser (UCSC)LRRC71
Gene fusions - Rearrangements
Tumor Fusion PortalLRRC71
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC71 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC71
dbVarLRRC71
ClinVarLRRC71
1000_GenomesLRRC71 
Exome Variant ServerLRRC71
ExAC (Exome Aggregation Consortium)ENSG00000160838
GNOMAD BrowserENSG00000160838
Genetic variants : HAPMAP149499
Genomic Variants (DGV)LRRC71 [DGVbeta]
DECIPHERLRRC71 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC71 
Mutations
ICGC Data PortalLRRC71 
TCGA Data PortalLRRC71 
Broad Tumor PortalLRRC71
OASIS PortalLRRC71 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC71  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC71
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRRC71
DgiDB (Drug Gene Interaction Database)LRRC71
DoCM (Curated mutations)LRRC71 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC71 (select a term)
intoGenLRRC71
Cancer3DLRRC71(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLRRC71
MedgenLRRC71
Genetic Testing Registry LRRC71
NextProtQ8N4P6 [Medical]
TSGene149499
GENETestsLRRC71
Target ValidationLRRC71
Huge Navigator LRRC71 [HugePedia]
snp3D : Map Gene to Disease149499
BioCentury BCIQLRRC71
ClinGenLRRC71
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149499
Chemical/Pharm GKB GenePA142672476
Clinical trialLRRC71
Miscellaneous
canSAR (ICR)LRRC71 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC71
EVEXLRRC71
GoPubMedLRRC71
iHOPLRRC71
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:01:19 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.