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LRRC71 (leucine rich repeat containing 71)

Identity

Alias_namesC1orf92
chromosome 1 open reading frame 92
Alias_symbol (synonym)FLJ32884
Other alias
HGNC (Hugo) LRRC71
LocusID (NCBI) 149499
Atlas_Id 68648
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 156890424 and ends at 156902880 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC71   26556
Cards
Entrez_Gene (NCBI)LRRC71  149499  leucine rich repeat containing 71
AliasesC1orf92
GeneCards (Weizmann)LRRC71
Ensembl hg19 (Hinxton)ENSG00000160838 [Gene_View]  chr1:156890424-156902880 [Contig_View]  LRRC71 [Vega]
Ensembl hg38 (Hinxton)ENSG00000160838 [Gene_View]  chr1:156890424-156902880 [Contig_View]  LRRC71 [Vega]
ICGC DataPortalENSG00000160838
TCGA cBioPortalLRRC71
AceView (NCBI)LRRC71
Genatlas (Paris)LRRC71
WikiGenes149499
SOURCE (Princeton)LRRC71
Genetics Home Reference (NIH)LRRC71
Genomic and cartography
GoldenPath hg19 (UCSC)LRRC71  -     chr1:156890424-156902880 +  1q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LRRC71  -     1q23.1   [Description]    (hg38-Dec_2013)
EnsemblLRRC71 - 1q23.1 [CytoView hg19]  LRRC71 - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBILRRC71 [Mapview hg19]  LRRC71 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057446 AK292342 BC033790 BU689904
RefSeq transcript (Entrez)NM_144702
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)LRRC71
Cluster EST : UnigeneHs.491734 [ NCBI ]
CGAP (NCI)Hs.491734
Alternative Splicing GalleryENSG00000160838
Gene ExpressionLRRC71 [ NCBI-GEO ]   LRRC71 [ EBI - ARRAY_EXPRESS ]   LRRC71 [ SEEK ]   LRRC71 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC71 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149499
GTEX Portal (Tissue expression)LRRC71
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4P6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4P6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4P6
Splice isoforms : SwissVarQ8N4P6
PhosPhoSitePlusQ8N4P6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LRRC71
DMDM Disease mutations149499
Blocks (Seattle)LRRC71
SuperfamilyQ8N4P6
Human Protein AtlasENSG00000160838
Peptide AtlasQ8N4P6
HPRD08737
IPIIPI00395907   IPI00845346   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4P6
IntAct (EBI)Q8N4P6
FunCoupENSG00000160838
BioGRIDLRRC71
STRING (EMBL)LRRC71
ZODIACLRRC71
Ontologies - Pathways
QuickGOQ8N4P6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC71
Atlas of Cancer Signalling NetworkLRRC71
Wikipedia pathwaysLRRC71
Orthology - Evolution
OrthoDB149499
GeneTree (enSembl)ENSG00000160838
Phylogenetic Trees/Animal Genes : TreeFamLRRC71
HOVERGENQ8N4P6
HOGENOMQ8N4P6
Homologs : HomoloGeneLRRC71
Homology/Alignments : Family Browser (UCSC)LRRC71
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC71 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC71
dbVarLRRC71
ClinVarLRRC71
1000_GenomesLRRC71 
Exome Variant ServerLRRC71
ExAC (Exome Aggregation Consortium)LRRC71 (select the gene name)
Genetic variants : HAPMAP149499
Genomic Variants (DGV)LRRC71 [DGVbeta]
DECIPHER (Syndromes)1:156890424-156902880  ENSG00000160838
CONAN: Copy Number AnalysisLRRC71 
Mutations
ICGC Data PortalLRRC71 
TCGA Data PortalLRRC71 
Broad Tumor PortalLRRC71
OASIS PortalLRRC71 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRC71  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRC71
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRRC71
DgiDB (Drug Gene Interaction Database)LRRC71
DoCM (Curated mutations)LRRC71 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC71 (select a term)
intoGenLRRC71
Cancer3DLRRC71(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC71
Genetic Testing Registry LRRC71
NextProtQ8N4P6 [Medical]
TSGene149499
GENETestsLRRC71
Huge Navigator LRRC71 [HugePedia]
snp3D : Map Gene to Disease149499
BioCentury BCIQLRRC71
ClinGenLRRC71
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149499
Chemical/Pharm GKB GenePA142672476
Clinical trialLRRC71
Miscellaneous
canSAR (ICR)LRRC71 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC71
EVEXLRRC71
GoPubMedLRRC71
iHOPLRRC71
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:11 CET 2017

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