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LRRC72 (leucine rich repeat containing 72)

Identity

Other alias-
HGNC (Hugo) LRRC72
LocusID (NCBI) 100506049
Atlas_Id 68649
Location 7p21.1  [Link to chromosome band 7p21]
Location_base_pair Starts at 16526880 and ends at 16581489 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC72   42972
Cards
Entrez_Gene (NCBI)LRRC72  100506049  leucine rich repeat containing 72
Aliases
GeneCards (Weizmann)LRRC72
Ensembl hg19 (Hinxton)ENSG00000205858 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205858 [Gene_View]  chr7:16526880-16581489 [Contig_View]  LRRC72 [Vega]
ICGC DataPortalENSG00000205858
TCGA cBioPortalLRRC72
AceView (NCBI)LRRC72
Genatlas (Paris)LRRC72
WikiGenes100506049
SOURCE (Princeton)LRRC72
Genetics Home Reference (NIH)LRRC72
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC72  -     chr7:16526880-16581489 +  7p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC72  -     7p21.1   [Description]    (hg19-Feb_2009)
EnsemblLRRC72 - 7p21.1 [CytoView hg19]  LRRC72 - 7p21.1 [CytoView hg38]
Mapping of homologs : NCBILRRC72 [Mapview hg19]  LRRC72 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW341438 BF222754 DT932641 DT932642
RefSeq transcript (Entrez)NM_001195280
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC72
Cluster EST : UnigeneHs.278036 [ NCBI ]
CGAP (NCI)Hs.278036
Alternative Splicing GalleryENSG00000205858
Gene ExpressionLRRC72 [ NCBI-GEO ]   LRRC72 [ EBI - ARRAY_EXPRESS ]   LRRC72 [ SEEK ]   LRRC72 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC72 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506049
GTEX Portal (Tissue expression)LRRC72
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NJI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NJI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NJI9
Splice isoforms : SwissVarA6NJI9
PhosPhoSitePlusA6NJI9
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LRRC72
DMDM Disease mutations100506049
Blocks (Seattle)LRRC72
SuperfamilyA6NJI9
Human Protein AtlasENSG00000205858
Peptide AtlasA6NJI9
IPIIPI00893757   IPI00893620   
Protein Interaction databases
DIP (DOE-UCLA)A6NJI9
IntAct (EBI)A6NJI9
FunCoupENSG00000205858
BioGRIDLRRC72
STRING (EMBL)LRRC72
ZODIACLRRC72
Ontologies - Pathways
QuickGOA6NJI9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC72
Atlas of Cancer Signalling NetworkLRRC72
Wikipedia pathwaysLRRC72
Orthology - Evolution
OrthoDB100506049
GeneTree (enSembl)ENSG00000205858
Phylogenetic Trees/Animal Genes : TreeFamLRRC72
HOVERGENA6NJI9
HOGENOMA6NJI9
Homologs : HomoloGeneLRRC72
Homology/Alignments : Family Browser (UCSC)LRRC72
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC72 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC72
dbVarLRRC72
ClinVarLRRC72
1000_GenomesLRRC72 
Exome Variant ServerLRRC72
ExAC (Exome Aggregation Consortium)LRRC72 (select the gene name)
Genetic variants : HAPMAP100506049
Genomic Variants (DGV)LRRC72 [DGVbeta]
DECIPHERLRRC72 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC72 
Mutations
ICGC Data PortalLRRC72 
TCGA Data PortalLRRC72 
Broad Tumor PortalLRRC72
OASIS PortalLRRC72 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLRRC72
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch LRRC72
DgiDB (Drug Gene Interaction Database)LRRC72
DoCM (Curated mutations)LRRC72 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC72 (select a term)
intoGenLRRC72
Cancer3DLRRC72(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC72
Genetic Testing Registry LRRC72
NextProtA6NJI9 [Medical]
TSGene100506049
GENETestsLRRC72
Target ValidationLRRC72
Huge Navigator LRRC72 [HugePedia]
snp3D : Map Gene to Disease100506049
BioCentury BCIQLRRC72
ClinGenLRRC72
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506049
Chemical/Pharm GKB GenePA166049094
Clinical trialLRRC72
Miscellaneous
canSAR (ICR)LRRC72 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC72
EVEXLRRC72
GoPubMedLRRC72
iHOPLRRC72
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:35 CEST 2017

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