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LRRC73 (leucine rich repeat containing 73)

Identity

Alias_namesC6orf154
chromosome 6 open reading frame 154
Alias_symbol (synonym)dJ337H4.2
Other alias
HGNC (Hugo) LRRC73
LocusID (NCBI) 221424
Atlas_Id 68650
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 43506965 and ends at 43510343 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC73   21375
Cards
Entrez_Gene (NCBI)LRRC73  221424  leucine rich repeat containing 73
AliasesC6orf154
GeneCards (Weizmann)LRRC73
Ensembl hg19 (Hinxton)ENSG00000204052 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204052 [Gene_View]  ENSG00000204052 [Sequence]  chr6:43506965-43510343 [Contig_View]  LRRC73 [Vega]
ICGC DataPortalENSG00000204052
TCGA cBioPortalLRRC73
AceView (NCBI)LRRC73
Genatlas (Paris)LRRC73
WikiGenes221424
SOURCE (Princeton)LRRC73
Genetics Home Reference (NIH)LRRC73
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC73  -     chr6:43506965-43510343 -  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC73  -     6p21.1   [Description]    (hg19-Feb_2009)
EnsemblLRRC73 - 6p21.1 [CytoView hg19]  LRRC73 - 6p21.1 [CytoView hg38]
Mapping of homologs : NCBILRRC73 [Mapview hg19]  LRRC73 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126786 BC107130 BC108661 HY024930
RefSeq transcript (Entrez)NM_001012974 NM_001271882
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC73
Cluster EST : UnigeneHs.445552 [ NCBI ]
CGAP (NCI)Hs.445552
Alternative Splicing GalleryENSG00000204052
Gene ExpressionLRRC73 [ NCBI-GEO ]   LRRC73 [ EBI - ARRAY_EXPRESS ]   LRRC73 [ SEEK ]   LRRC73 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC73 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221424
GTEX Portal (Tissue expression)LRRC73
Human Protein AtlasENSG00000204052-LRRC73 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JTD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JTD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JTD7
Splice isoforms : SwissVarQ5JTD7
PhosPhoSitePlusQ5JTD7
Domains : Interpro (EBI)L_dom-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LRRC73
DMDM Disease mutations221424
Blocks (Seattle)LRRC73
SuperfamilyQ5JTD7
Human Protein Atlas [tissue]ENSG00000204052-LRRC73 [tissue]
Peptide AtlasQ5JTD7
HPRD10167
IPIIPI00177321   
Protein Interaction databases
DIP (DOE-UCLA)Q5JTD7
IntAct (EBI)Q5JTD7
FunCoupENSG00000204052
BioGRIDLRRC73
STRING (EMBL)LRRC73
ZODIACLRRC73
Ontologies - Pathways
QuickGOQ5JTD7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC73
Atlas of Cancer Signalling NetworkLRRC73
Wikipedia pathwaysLRRC73
Orthology - Evolution
OrthoDB221424
GeneTree (enSembl)ENSG00000204052
Phylogenetic Trees/Animal Genes : TreeFamLRRC73
HOVERGENQ5JTD7
HOGENOMQ5JTD7
Homologs : HomoloGeneLRRC73
Homology/Alignments : Family Browser (UCSC)LRRC73
Gene fusions - Rearrangements
Fusion : QuiverLRRC73
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC73 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC73
dbVarLRRC73
ClinVarLRRC73
1000_GenomesLRRC73 
Exome Variant ServerLRRC73
ExAC (Exome Aggregation Consortium)ENSG00000204052
GNOMAD BrowserENSG00000204052
Varsome BrowserLRRC73
Genetic variants : HAPMAP221424
Genomic Variants (DGV)LRRC73 [DGVbeta]
DECIPHERLRRC73 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC73 
Mutations
ICGC Data PortalLRRC73 
TCGA Data PortalLRRC73 
Broad Tumor PortalLRRC73
OASIS PortalLRRC73 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLRRC73
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRRC73
DgiDB (Drug Gene Interaction Database)LRRC73
DoCM (Curated mutations)LRRC73 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC73 (select a term)
intoGenLRRC73
Cancer3DLRRC73(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLRRC73
MedgenLRRC73
Genetic Testing Registry LRRC73
NextProtQ5JTD7 [Medical]
TSGene221424
GENETestsLRRC73
Target ValidationLRRC73
Huge Navigator LRRC73 [HugePedia]
snp3D : Map Gene to Disease221424
BioCentury BCIQLRRC73
ClinGenLRRC73
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221424
Chemical/Pharm GKB GenePA134973511
Clinical trialLRRC73
Miscellaneous
canSAR (ICR)LRRC73 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC73
EVEXLRRC73
GoPubMedLRRC73
iHOPLRRC73
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:11:50 CEST 2018

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