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LRRC75A-AS1 (LRRC75A antisense RNA 1)

Identity

Alias_namesC17orf45
NCRNA00188
C17orf76-AS1
FAM211A-AS1
chromosome 17 open reading frame 45
non-protein coding RNA 188
C17orf76 antisense RNA 1 (non-protein coding)
C17orf76 antisense RNA 1
FAM211A antisense RNA 1
Alias_symbol (synonym)MGC40157
Other aliasTSAP19
HGNC (Hugo) LRRC75A-AS1
LocusID (NCBI) 125144
Atlas_Id 68654
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 16441583 and ends at 16442018 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DRAP1 (11q13.1) / LRRC75A-AS1 (17p11.2)LRRC75A-AS1 (17p11.2) / AFAP1L1 (5q32)LRRC75A-AS1 (17p11.2) / APEX1 (14q11.2)
LRRC75A-AS1 (17p11.2) / C6orf89 (6p21.2)LRRC75A-AS1 (17p11.2) / COL1A2 (7q21.3)LRRC75A-AS1 (17p11.2) / DENND5B (12p11.21)
LRRC75A-AS1 (17p11.2) / ITGB2 (21q22.3)LRRC75A-AS1 (17p11.2) / ITGB3BP (1p31.3)LRRC75A-AS1 (17p11.2) / LRRC59 (17q21.33)
LRRC75A-AS1 (17p11.2) / MEIS1 (2p14)LRRC75A-AS1 (17p11.2) / NCALD (8q22.3)LRRC75A-AS1 (17p11.2) / SCRN1 (7p14.3)
LRRC75A-AS1 (17p11.2) / SEZ6 (17q11.2)LRRC75A-AS1 (17p11.2) / SYN3 (22q12.3)LRRC75A-AS1 (17p11.2) / ZNF160 (19q13.41)
MGP (12p12.3) / LRRC75A-AS1 (17p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC75A-AS1   28619
Cards
Entrez_Gene (NCBI)LRRC75A-AS1  125144  LRRC75A antisense RNA 1
AliasesC17orf45; C17orf76-AS1; FAM211A-AS1; NCRNA00188; 
TSAP19
GeneCards (Weizmann)LRRC75A-AS1
Ensembl hg19 (Hinxton)ENSG00000175061 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175061 [Gene_View]  chr17:16441583-16442018 [Contig_View]  LRRC75A-AS1 [Vega]
ICGC DataPortalENSG00000175061
TCGA cBioPortalLRRC75A-AS1
AceView (NCBI)LRRC75A-AS1
Genatlas (Paris)LRRC75A-AS1
WikiGenes125144
SOURCE (Princeton)LRRC75A-AS1
Genetics Home Reference (NIH)LRRC75A-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC75A-AS1  -     chr17:16441583-16442018 +  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC75A-AS1  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblLRRC75A-AS1 - 17p11.2 [CytoView hg19]  LRRC75A-AS1 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBILRRC75A-AS1 [Mapview hg19]  LRRC75A-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ012499 AK098643 AK307982 AK308482 AK309961
RefSeq transcript (Entrez)NM_152350
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC75A-AS1
Cluster EST : UnigeneHs.368934 [ NCBI ]
CGAP (NCI)Hs.368934
Alternative Splicing GalleryENSG00000175061
Gene ExpressionLRRC75A-AS1 [ NCBI-GEO ]   LRRC75A-AS1 [ EBI - ARRAY_EXPRESS ]   LRRC75A-AS1 [ SEEK ]   LRRC75A-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC75A-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125144
GTEX Portal (Tissue expression)LRRC75A-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1F1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1F1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1F1
Splice isoforms : SwissVarQ8N1F1
PhosPhoSitePlusQ8N1F1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LRRC75A-AS1
DMDM Disease mutations125144
Blocks (Seattle)LRRC75A-AS1
SuperfamilyQ8N1F1
Human Protein AtlasENSG00000175061
Peptide AtlasQ8N1F1
HPRD17549
IPIIPI00166147   IPI00816477   IPI00815985   IPI01018310   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1F1
IntAct (EBI)Q8N1F1
FunCoupENSG00000175061
BioGRIDLRRC75A-AS1
STRING (EMBL)LRRC75A-AS1
ZODIACLRRC75A-AS1
Ontologies - Pathways
QuickGOQ8N1F1
Ontology : AmiGOprotein binding  mitochondrion  
Ontology : EGO-EBIprotein binding  mitochondrion  
NDEx NetworkLRRC75A-AS1
Atlas of Cancer Signalling NetworkLRRC75A-AS1
Wikipedia pathwaysLRRC75A-AS1
Orthology - Evolution
OrthoDB125144
GeneTree (enSembl)ENSG00000175061
Phylogenetic Trees/Animal Genes : TreeFamLRRC75A-AS1
HOVERGENQ8N1F1
HOGENOMQ8N1F1
Homologs : HomoloGeneLRRC75A-AS1
Homology/Alignments : Family Browser (UCSC)LRRC75A-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC75A-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC75A-AS1
dbVarLRRC75A-AS1
ClinVarLRRC75A-AS1
1000_GenomesLRRC75A-AS1 
Exome Variant ServerLRRC75A-AS1
ExAC (Exome Aggregation Consortium)LRRC75A-AS1 (select the gene name)
Genetic variants : HAPMAP125144
Genomic Variants (DGV)LRRC75A-AS1 [DGVbeta]
DECIPHERLRRC75A-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC75A-AS1 
Mutations
ICGC Data PortalLRRC75A-AS1 
TCGA Data PortalLRRC75A-AS1 
Broad Tumor PortalLRRC75A-AS1
OASIS PortalLRRC75A-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLRRC75A-AS1
BioMutasearch LRRC75A-AS1
DgiDB (Drug Gene Interaction Database)LRRC75A-AS1
DoCM (Curated mutations)LRRC75A-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC75A-AS1 (select a term)
intoGenLRRC75A-AS1
Cancer3DLRRC75A-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC75A-AS1
Genetic Testing Registry LRRC75A-AS1
NextProtQ8N1F1 [Medical]
TSGene125144
GENETestsLRRC75A-AS1
Target ValidationLRRC75A-AS1
Huge Navigator LRRC75A-AS1 [HugePedia]
snp3D : Map Gene to Disease125144
BioCentury BCIQLRRC75A-AS1
ClinGenLRRC75A-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD125144
Chemical/Pharm GKB GenePA165432227
Clinical trialLRRC75A-AS1
Miscellaneous
canSAR (ICR)LRRC75A-AS1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC75A-AS1
EVEXLRRC75A-AS1
GoPubMedLRRC75A-AS1
iHOPLRRC75A-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:36 CEST 2017

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