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LRRC75A (leucine rich repeat containing 75A)

Identity

Alias_namesC17orf76
FAM211A
chromosome 17 open reading frame 76
family with sequence similarity 211, member A
Alias_symbol (synonym)FLJ35696
Other alias
HGNC (Hugo) LRRC75A
LocusID (NCBI) 388341
Atlas_Id 68653
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 16442005 and ends at 16492191 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LRRC75A (17p11.2) / LRRC75A (17p11.2)LRRC75A (17p11.2) / PEMT (17p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC75A   32403
Cards
Entrez_Gene (NCBI)LRRC75A  388341  leucine rich repeat containing 75A
AliasesC17orf76; FAM211A
GeneCards (Weizmann)LRRC75A
Ensembl hg19 (Hinxton)ENSG00000181350 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181350 [Gene_View]  chr17:16442005-16492191 [Contig_View]  LRRC75A [Vega]
ICGC DataPortalENSG00000181350
TCGA cBioPortalLRRC75A
AceView (NCBI)LRRC75A
Genatlas (Paris)LRRC75A
WikiGenes388341
SOURCE (Princeton)LRRC75A
Genetics Home Reference (NIH)LRRC75A
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC75A  -     chr17:16442005-16492191 -  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC75A  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblLRRC75A - 17p11.2 [CytoView hg19]  LRRC75A - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBILRRC75A [Mapview hg19]  LRRC75A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI298465 AK093015 AL833245 AL833260 BC144381
RefSeq transcript (Entrez)NM_001113567 NM_207387
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC75A
Cluster EST : UnigeneHs.742609 [ NCBI ]
CGAP (NCI)Hs.742609
Alternative Splicing GalleryENSG00000181350
Gene ExpressionLRRC75A [ NCBI-GEO ]   LRRC75A [ EBI - ARRAY_EXPRESS ]   LRRC75A [ SEEK ]   LRRC75A [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC75A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388341
GTEX Portal (Tissue expression)LRRC75A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NAA5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NAA5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NAA5
Splice isoforms : SwissVarQ8NAA5
PhosPhoSitePlusQ8NAA5
Domains : Interpro (EBI)L_dom-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LRRC75A
DMDM Disease mutations388341
Blocks (Seattle)LRRC75A
SuperfamilyQ8NAA5
Human Protein AtlasENSG00000181350
Peptide AtlasQ8NAA5
HPRD16939
IPIIPI00797726   IPI00936631   
Protein Interaction databases
DIP (DOE-UCLA)Q8NAA5
IntAct (EBI)Q8NAA5
FunCoupENSG00000181350
BioGRIDLRRC75A
STRING (EMBL)LRRC75A
ZODIACLRRC75A
Ontologies - Pathways
QuickGOQ8NAA5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC75A
Atlas of Cancer Signalling NetworkLRRC75A
Wikipedia pathwaysLRRC75A
Orthology - Evolution
OrthoDB388341
GeneTree (enSembl)ENSG00000181350
Phylogenetic Trees/Animal Genes : TreeFamLRRC75A
HOVERGENQ8NAA5
HOGENOMQ8NAA5
Homologs : HomoloGeneLRRC75A
Homology/Alignments : Family Browser (UCSC)LRRC75A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC75A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC75A
dbVarLRRC75A
ClinVarLRRC75A
1000_GenomesLRRC75A 
Exome Variant ServerLRRC75A
ExAC (Exome Aggregation Consortium)LRRC75A (select the gene name)
Genetic variants : HAPMAP388341
Genomic Variants (DGV)LRRC75A [DGVbeta]
DECIPHERLRRC75A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC75A 
Mutations
ICGC Data PortalLRRC75A 
TCGA Data PortalLRRC75A 
Broad Tumor PortalLRRC75A
OASIS PortalLRRC75A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLRRC75A
BioMutasearch LRRC75A
DgiDB (Drug Gene Interaction Database)LRRC75A
DoCM (Curated mutations)LRRC75A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC75A (select a term)
intoGenLRRC75A
Cancer3DLRRC75A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC75A
Genetic Testing Registry LRRC75A
NextProtQ8NAA5 [Medical]
TSGene388341
GENETestsLRRC75A
Target ValidationLRRC75A
Huge Navigator LRRC75A [HugePedia]
snp3D : Map Gene to Disease388341
BioCentury BCIQLRRC75A
ClinGenLRRC75A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388341
Chemical/Pharm GKB GenePA143485400
Clinical trialLRRC75A
Miscellaneous
canSAR (ICR)LRRC75A (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC75A
EVEXLRRC75A
GoPubMedLRRC75A
iHOPLRRC75A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:25:01 CEST 2017

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