Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LRRC77P (leucine rich repeat containing 77, pseudogene)

Identity

Alias_namesLINC01330
long intergenic non-protein coding RNA 1330
Other alias
HGNC (Hugo) LRRC77P
LocusID (NCBI) 646168
Atlas_Id 79095
Location 3q26.1  [Link to chromosome band 3q26]
Location_base_pair Starts at 167895948 and ends at 167924009 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC77P   50536
Cards
Entrez_Gene (NCBI)LRRC77P  646168  leucine rich repeat containing 77, pseudogene
AliasesLINC01330
GeneCards (Weizmann)LRRC77P
Ensembl hg19 (Hinxton)ENSG00000244227 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244227 [Gene_View]  ENSG00000244227 [Sequence]  chr3:167895948-167924009 [Contig_View]  LRRC77P [Vega]
ICGC DataPortalENSG00000244227
TCGA cBioPortalLRRC77P
AceView (NCBI)LRRC77P
Genatlas (Paris)LRRC77P
WikiGenes646168
SOURCE (Princeton)LRRC77P
Genetics Home Reference (NIH)LRRC77P
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC77P  -     chr3:167895948-167924009 +  3q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC77P  -     3q26.1   [Description]    (hg19-Feb_2009)
EnsemblLRRC77P - 3q26.1 [CytoView hg19]  LRRC77P - 3q26.1 [CytoView hg38]
Mapping of homologs : NCBILRRC77P [Mapview hg19]  LRRC77P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093355 BC043538 BI828519
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC77P
Cluster EST : UnigeneHs.390443 [ NCBI ]
CGAP (NCI)Hs.390443
Alternative Splicing GalleryENSG00000244227
Gene ExpressionLRRC77P [ NCBI-GEO ]   LRRC77P [ EBI - ARRAY_EXPRESS ]   LRRC77P [ SEEK ]   LRRC77P [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC77P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)646168
GTEX Portal (Tissue expression)LRRC77P
Human Protein AtlasENSG00000244227-LRRC77P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LRRC77P
DMDM Disease mutations646168
Blocks (Seattle)LRRC77P
Human Protein Atlas [tissue]ENSG00000244227-LRRC77P [tissue]
IPIIPI00847199   
Protein Interaction databases
FunCoupENSG00000244227
BioGRIDLRRC77P
STRING (EMBL)LRRC77P
ZODIACLRRC77P
Ontologies - Pathways
Huge Navigator LRRC77P [HugePedia]
snp3D : Map Gene to Disease646168
BioCentury BCIQLRRC77P
ClinGenLRRC77P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646168
Clinical trialLRRC77P
Miscellaneous
canSAR (ICR)LRRC77P (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC77P
EVEXLRRC77P
GoPubMedLRRC77P
iHOPLRRC77P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:11:51 CEST 2018

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