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LRRC9 (leucine rich repeat containing 9)

Identity

Alias_namesleucine-rich repeat-containing 9
Alias_symbol (synonym)FLJ46156
Other alias-
HGNC (Hugo) LRRC9
LocusID (NCBI) 341883
Atlas_Id 68660
Location 14q23.1  [Link to chromosome band 14q23]
Location_base_pair Starts at 59919713 and ends at 60063559 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRC9   19848
Cards
Entrez_Gene (NCBI)LRRC9  341883  leucine rich repeat containing 9
Aliases
GeneCards (Weizmann)LRRC9
Ensembl hg19 (Hinxton)ENSG00000131951 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131951 [Gene_View]  chr14:59919713-60063559 [Contig_View]  LRRC9 [Vega]
ICGC DataPortalENSG00000131951
TCGA cBioPortalLRRC9
AceView (NCBI)LRRC9
Genatlas (Paris)LRRC9
WikiGenes341883
SOURCE (Princeton)LRRC9
Genetics Home Reference (NIH)LRRC9
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC9  -     chr14:59919713-60063559 +  14q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC9  -     14q23.1   [Description]    (hg19-Feb_2009)
EnsemblLRRC9 - 14q23.1 [CytoView hg19]  LRRC9 - 14q23.1 [CytoView hg38]
Mapping of homologs : NCBILRRC9 [Mapview hg19]  LRRC9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128037
RefSeq transcript (Entrez)NM_198499
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC9
Cluster EST : UnigeneHs.666245 [ NCBI ]
CGAP (NCI)Hs.666245
Alternative Splicing GalleryENSG00000131951
Gene ExpressionLRRC9 [ NCBI-GEO ]   LRRC9 [ EBI - ARRAY_EXPRESS ]   LRRC9 [ SEEK ]   LRRC9 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)341883
GTEX Portal (Tissue expression)LRRC9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRR7
Splice isoforms : SwissVarQ6ZRR7
PhosPhoSitePlusQ6ZRR7
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    Poly(ADP-ribose)pol_cat_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRC9
DMDM Disease mutations341883
Blocks (Seattle)LRRC9
SuperfamilyQ6ZRR7
Human Protein AtlasENSG00000131951
Peptide AtlasQ6ZRR7
HPRD13525
IPIIPI00893208   IPI00394879   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRR7
IntAct (EBI)Q6ZRR7
FunCoupENSG00000131951
BioGRIDLRRC9
STRING (EMBL)LRRC9
ZODIACLRRC9
Ontologies - Pathways
QuickGOQ6ZRR7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRC9
Atlas of Cancer Signalling NetworkLRRC9
Wikipedia pathwaysLRRC9
Orthology - Evolution
OrthoDB341883
GeneTree (enSembl)ENSG00000131951
Phylogenetic Trees/Animal Genes : TreeFamLRRC9
HOVERGENQ6ZRR7
HOGENOMQ6ZRR7
Homologs : HomoloGeneLRRC9
Homology/Alignments : Family Browser (UCSC)LRRC9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRC9
dbVarLRRC9
ClinVarLRRC9
1000_GenomesLRRC9 
Exome Variant ServerLRRC9
ExAC (Exome Aggregation Consortium)LRRC9 (select the gene name)
Genetic variants : HAPMAP341883
Genomic Variants (DGV)LRRC9 [DGVbeta]
DECIPHERLRRC9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRC9 
Mutations
ICGC Data PortalLRRC9 
TCGA Data PortalLRRC9 
Broad Tumor PortalLRRC9
OASIS PortalLRRC9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLRRC9
BioMutasearch LRRC9
DgiDB (Drug Gene Interaction Database)LRRC9
DoCM (Curated mutations)LRRC9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRC9 (select a term)
intoGenLRRC9
Cancer3DLRRC9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRC9
Genetic Testing Registry LRRC9
NextProtQ6ZRR7 [Medical]
TSGene341883
GENETestsLRRC9
Target ValidationLRRC9
Huge Navigator LRRC9 [HugePedia]
snp3D : Map Gene to Disease341883
BioCentury BCIQLRRC9
ClinGenLRRC9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD341883
Chemical/Pharm GKB GenePA134885088
Clinical trialLRRC9
Miscellaneous
canSAR (ICR)LRRC9 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC9
EVEXLRRC9
GoPubMedLRRC9
iHOPLRRC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:25:03 CEST 2017

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