Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LRRD1 (leucine rich repeats and death domain containing 1)

Identity

Alias_symbol (synonym)IMAGE:4798971
Other alias-
HGNC (Hugo) LRRD1
LocusID (NCBI) 401387
Atlas_Id 68662
Location 7q21.2  [Link to chromosome band 7q21]
Location_base_pair Starts at 92144884 and ends at 92165276 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRD1   34300
Cards
Entrez_Gene (NCBI)LRRD1  401387  leucine rich repeats and death domain containing 1
Aliases
GeneCards (Weizmann)LRRD1
Ensembl hg19 (Hinxton)ENSG00000240720 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240720 [Gene_View]  chr7:92144884-92165276 [Contig_View]  LRRD1 [Vega]
ICGC DataPortalENSG00000240720
TCGA cBioPortalLRRD1
AceView (NCBI)LRRD1
Genatlas (Paris)LRRD1
WikiGenes401387
SOURCE (Princeton)LRRD1
Genetics Home Reference (NIH)LRRD1
Genomic and cartography
GoldenPath hg38 (UCSC)LRRD1  -     chr7:92144884-92165276 -  7q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRD1  -     7q21.2   [Description]    (hg19-Feb_2009)
EnsemblLRRD1 - 7q21.2 [CytoView hg19]  LRRD1 - 7q21.2 [CytoView hg38]
Mapping of homologs : NCBILRRD1 [Mapview hg19]  LRRD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC026112 BC144674 BC144678
RefSeq transcript (Entrez)NM_001045475 NM_001161528
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRD1
Cluster EST : UnigeneHs.671729 [ NCBI ]
CGAP (NCI)Hs.671729
Alternative Splicing GalleryENSG00000240720
Gene ExpressionLRRD1 [ NCBI-GEO ]   LRRD1 [ EBI - ARRAY_EXPRESS ]   LRRD1 [ SEEK ]   LRRD1 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401387
GTEX Portal (Tissue expression)LRRD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4D1F6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4D1F6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4D1F6
Splice isoforms : SwissVarA4D1F6
PhosPhoSitePlusA4D1F6
Domaine pattern : Prosite (Expaxy)DEATH_DOMAIN (PS50017)    LRR (PS51450)   
Domains : Interpro (EBI)DEATH-like_dom    Death_domain    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_1 (PF00560)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam00560    pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRD1
DMDM Disease mutations401387
Blocks (Seattle)LRRD1
SuperfamilyA4D1F6
Human Protein AtlasENSG00000240720
Peptide AtlasA4D1F6
IPIIPI00887636   IPI00935774   IPI00890745   
Protein Interaction databases
DIP (DOE-UCLA)A4D1F6
IntAct (EBI)A4D1F6
FunCoupENSG00000240720
BioGRIDLRRD1
STRING (EMBL)LRRD1
ZODIACLRRD1
Ontologies - Pathways
QuickGOA4D1F6
Ontology : AmiGOcytoplasm  signal transduction  basolateral plasma membrane  maintenance of epithelial cell apical/basal polarity  
Ontology : EGO-EBIcytoplasm  signal transduction  basolateral plasma membrane  maintenance of epithelial cell apical/basal polarity  
NDEx NetworkLRRD1
Atlas of Cancer Signalling NetworkLRRD1
Wikipedia pathwaysLRRD1
Orthology - Evolution
OrthoDB401387
GeneTree (enSembl)ENSG00000240720
Phylogenetic Trees/Animal Genes : TreeFamLRRD1
HOVERGENA4D1F6
HOGENOMA4D1F6
Homologs : HomoloGeneLRRD1
Homology/Alignments : Family Browser (UCSC)LRRD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRD1
dbVarLRRD1
ClinVarLRRD1
1000_GenomesLRRD1 
Exome Variant ServerLRRD1
ExAC (Exome Aggregation Consortium)LRRD1 (select the gene name)
Genetic variants : HAPMAP401387
Genomic Variants (DGV)LRRD1 [DGVbeta]
DECIPHERLRRD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRD1 
Mutations
ICGC Data PortalLRRD1 
TCGA Data PortalLRRD1 
Broad Tumor PortalLRRD1
OASIS PortalLRRD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRRD1
DgiDB (Drug Gene Interaction Database)LRRD1
DoCM (Curated mutations)LRRD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRD1 (select a term)
intoGenLRRD1
Cancer3DLRRD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRD1
Genetic Testing Registry LRRD1
NextProtA4D1F6 [Medical]
TSGene401387
GENETestsLRRD1
Target ValidationLRRD1
Huge Navigator LRRD1 [HugePedia]
snp3D : Map Gene to Disease401387
BioCentury BCIQLRRD1
ClinGenLRRD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401387
Chemical/Pharm GKB GenePA166049018
Clinical trialLRRD1
Miscellaneous
canSAR (ICR)LRRD1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRD1
EVEXLRRD1
GoPubMedLRRD1
iHOPLRRD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:25:03 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.