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LRRFIP2 (LRR binding FLII interacting protein 2)

Identity

Alias_namesleucine rich repeat (in FLII) interacting protein 2
Alias_symbol (synonym)HUFI-2
Other alias
HGNC (Hugo) LRRFIP2
LocusID (NCBI) 9209
Atlas_Id 41205
Location 3p22.2  [Link to chromosome band 3p22]
Location_base_pair Starts at 37052626 and ends at 37176360 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CAMK1D (10p13) / LRRFIP2 (3p22.2)LRRFIP2 (3p22.2) / BGN (Xq28)LRRFIP2 (3p22.2) / LRRFIP2 (3p22.2)
LRRFIP2 (3p22.2) / MLH1 (3p22.2)SUMF1 (3p26.1) / LRRFIP2 (3p22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRFIP2   6703
Cards
Entrez_Gene (NCBI)LRRFIP2  9209  LRR binding FLII interacting protein 2
AliasesHUFI-2
GeneCards (Weizmann)LRRFIP2
Ensembl hg19 (Hinxton)ENSG00000093167 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000093167 [Gene_View]  chr3:37052626-37176360 [Contig_View]  LRRFIP2 [Vega]
ICGC DataPortalENSG00000093167
TCGA cBioPortalLRRFIP2
AceView (NCBI)LRRFIP2
Genatlas (Paris)LRRFIP2
WikiGenes9209
SOURCE (Princeton)LRRFIP2
Genetics Home Reference (NIH)LRRFIP2
Genomic and cartography
GoldenPath hg38 (UCSC)LRRFIP2  -     chr3:37052626-37176360 -  3p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRFIP2  -     3p22.2   [Description]    (hg19-Feb_2009)
EnsemblLRRFIP2 - 3p22.2 [CytoView hg19]  LRRFIP2 - 3p22.2 [CytoView hg38]
Mapping of homologs : NCBILRRFIP2 [Mapview hg19]  LRRFIP2 [Mapview hg38]
OMIM614043   
Gene and transcription
Genbank (Entrez)AF115509 AK000255 AK024692 AK026336 AK124432
RefSeq transcript (Entrez)NM_001134369 NM_001282691 NM_001348297 NM_001348298 NM_001348299 NM_001348300 NM_001348301 NM_001348302 NM_001348303 NM_001348304 NM_001348305 NM_001348306 NM_001348307 NM_001348308 NM_001348309 NM_001348310 NM_001348311 NM_006309 NM_017724
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRFIP2
Cluster EST : UnigeneHs.740522 [ NCBI ]
CGAP (NCI)Hs.740522
Alternative Splicing GalleryENSG00000093167
Gene ExpressionLRRFIP2 [ NCBI-GEO ]   LRRFIP2 [ EBI - ARRAY_EXPRESS ]   LRRFIP2 [ SEEK ]   LRRFIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRFIP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9209
GTEX Portal (Tissue expression)LRRFIP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y608   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y608  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y608
Splice isoforms : SwissVarQ9Y608
PhosPhoSitePlusQ9Y608
Domains : Interpro (EBI)LRRFIP1/2   
Domain families : Pfam (Sanger)LRRFIP (PF09738)   
Domain families : Pfam (NCBI)pfam09738   
Conserved Domain (NCBI)LRRFIP2
DMDM Disease mutations9209
Blocks (Seattle)LRRFIP2
SuperfamilyQ9Y608
Human Protein AtlasENSG00000093167
Peptide AtlasQ9Y608
HPRD10061
IPIIPI00007277   IPI00015103   IPI00760735   IPI00789379   IPI00910490   IPI00925387   IPI00925984   IPI00924435   IPI00925568   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y608
IntAct (EBI)Q9Y608
FunCoupENSG00000093167
BioGRIDLRRFIP2
STRING (EMBL)LRRFIP2
ZODIACLRRFIP2
Ontologies - Pathways
QuickGOQ9Y608
Ontology : AmiGOprotein binding  cellular_component  regulation of transcription, DNA-templated  biological_process  Wnt signaling pathway  LRR domain binding  
Ontology : EGO-EBIprotein binding  cellular_component  regulation of transcription, DNA-templated  biological_process  Wnt signaling pathway  LRR domain binding  
NDEx NetworkLRRFIP2
Atlas of Cancer Signalling NetworkLRRFIP2
Wikipedia pathwaysLRRFIP2
Orthology - Evolution
OrthoDB9209
GeneTree (enSembl)ENSG00000093167
Phylogenetic Trees/Animal Genes : TreeFamLRRFIP2
HOVERGENQ9Y608
HOGENOMQ9Y608
Homologs : HomoloGeneLRRFIP2
Homology/Alignments : Family Browser (UCSC)LRRFIP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRFIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRFIP2
dbVarLRRFIP2
ClinVarLRRFIP2
1000_GenomesLRRFIP2 
Exome Variant ServerLRRFIP2
ExAC (Exome Aggregation Consortium)LRRFIP2 (select the gene name)
Genetic variants : HAPMAP9209
Genomic Variants (DGV)LRRFIP2 [DGVbeta]
DECIPHERLRRFIP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRFIP2 
Mutations
ICGC Data PortalLRRFIP2 
TCGA Data PortalLRRFIP2 
Broad Tumor PortalLRRFIP2
OASIS PortalLRRFIP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRFIP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRFIP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRRFIP2
DgiDB (Drug Gene Interaction Database)LRRFIP2
DoCM (Curated mutations)LRRFIP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRFIP2 (select a term)
intoGenLRRFIP2
Cancer3DLRRFIP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614043   
Orphanet
MedgenLRRFIP2
Genetic Testing Registry LRRFIP2
NextProtQ9Y608 [Medical]
TSGene9209
GENETestsLRRFIP2
Target ValidationLRRFIP2
Huge Navigator LRRFIP2 [HugePedia]
snp3D : Map Gene to Disease9209
BioCentury BCIQLRRFIP2
ClinGenLRRFIP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9209
Chemical/Pharm GKB GenePA30466
Clinical trialLRRFIP2
Miscellaneous
canSAR (ICR)LRRFIP2 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRFIP2
EVEXLRRFIP2
GoPubMedLRRFIP2
iHOPLRRFIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:05:55 CEST 2017

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