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LRRIQ1 (leucine rich repeats and IQ motif containing 1)

Identity

Alias_symbol (synonym)FLJ12303
KIAA1801
Other alias-
HGNC (Hugo) LRRIQ1
LocusID (NCBI) 84125
Atlas_Id 68663
Location 12q21.31  [Link to chromosome band 12q21]
Location_base_pair Starts at 85036321 and ends at 85245105 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LRRIQ1 (12q21.31) / LRRIQ1 (12q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRIQ1   25708
Cards
Entrez_Gene (NCBI)LRRIQ1  84125  leucine rich repeats and IQ motif containing 1
Aliases
GeneCards (Weizmann)LRRIQ1
Ensembl hg19 (Hinxton)ENSG00000133640 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133640 [Gene_View]  chr12:85036321-85245105 [Contig_View]  LRRIQ1 [Vega]
ICGC DataPortalENSG00000133640
TCGA cBioPortalLRRIQ1
AceView (NCBI)LRRIQ1
Genatlas (Paris)LRRIQ1
WikiGenes84125
SOURCE (Princeton)LRRIQ1
Genetics Home Reference (NIH)LRRIQ1
Genomic and cartography
GoldenPath hg38 (UCSC)LRRIQ1  -     chr12:85036321-85245105 +  12q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRIQ1  -     12q21.31   [Description]    (hg19-Feb_2009)
EnsemblLRRIQ1 - 12q21.31 [CytoView hg19]  LRRIQ1 - 12q21.31 [CytoView hg38]
Mapping of homologs : NCBILRRIQ1 [Mapview hg19]  LRRIQ1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB058704 AK022365 AK307799 AU122206 BC005399
RefSeq transcript (Entrez)NM_001079910 NM_032165
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRIQ1
Cluster EST : UnigeneHs.402200 [ NCBI ]
CGAP (NCI)Hs.402200
Alternative Splicing GalleryENSG00000133640
Gene ExpressionLRRIQ1 [ NCBI-GEO ]   LRRIQ1 [ EBI - ARRAY_EXPRESS ]   LRRIQ1 [ SEEK ]   LRRIQ1 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRIQ1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84125
GTEX Portal (Tissue expression)LRRIQ1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JM4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JM4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JM4
Splice isoforms : SwissVarQ96JM4
PhosPhoSitePlusQ96JM4
Domaine pattern : Prosite (Expaxy)IQ (PS50096)    LRR (PS51450)   
Domains : Interpro (EBI)IQ_motif_EF-hand-BS    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    P-loop_NTPase   
Domain families : Pfam (Sanger)IQ (PF00612)   
Domain families : Pfam (NCBI)pfam00612   
Domain families : Smart (EMBL)IQ (SM00015)  LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRIQ1
DMDM Disease mutations84125
Blocks (Seattle)LRRIQ1
SuperfamilyQ96JM4
Human Protein AtlasENSG00000133640
Peptide AtlasQ96JM4
HPRD09952
IPIIPI00797232   IPI00815851   IPI00952708   IPI00975833   IPI00984596   IPI00976888   IPI00978780   
Protein Interaction databases
DIP (DOE-UCLA)Q96JM4
IntAct (EBI)Q96JM4
FunCoupENSG00000133640
BioGRIDLRRIQ1
STRING (EMBL)LRRIQ1
ZODIACLRRIQ1
Ontologies - Pathways
QuickGOQ96JM4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLRRIQ1
Atlas of Cancer Signalling NetworkLRRIQ1
Wikipedia pathwaysLRRIQ1
Orthology - Evolution
OrthoDB84125
GeneTree (enSembl)ENSG00000133640
Phylogenetic Trees/Animal Genes : TreeFamLRRIQ1
HOVERGENQ96JM4
HOGENOMQ96JM4
Homologs : HomoloGeneLRRIQ1
Homology/Alignments : Family Browser (UCSC)LRRIQ1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRIQ1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRIQ1
dbVarLRRIQ1
ClinVarLRRIQ1
1000_GenomesLRRIQ1 
Exome Variant ServerLRRIQ1
ExAC (Exome Aggregation Consortium)LRRIQ1 (select the gene name)
Genetic variants : HAPMAP84125
Genomic Variants (DGV)LRRIQ1 [DGVbeta]
DECIPHERLRRIQ1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRIQ1 
Mutations
ICGC Data PortalLRRIQ1 
TCGA Data PortalLRRIQ1 
Broad Tumor PortalLRRIQ1
OASIS PortalLRRIQ1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRIQ1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRIQ1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRRIQ1
DgiDB (Drug Gene Interaction Database)LRRIQ1
DoCM (Curated mutations)LRRIQ1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRIQ1 (select a term)
intoGenLRRIQ1
Cancer3DLRRIQ1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRIQ1
Genetic Testing Registry LRRIQ1
NextProtQ96JM4 [Medical]
TSGene84125
GENETestsLRRIQ1
Huge Navigator LRRIQ1 [HugePedia]
snp3D : Map Gene to Disease84125
BioCentury BCIQLRRIQ1
ClinGenLRRIQ1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84125
Chemical/Pharm GKB GenePA134962087
Clinical trialLRRIQ1
Miscellaneous
canSAR (ICR)LRRIQ1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRIQ1
EVEXLRRIQ1
GoPubMedLRRIQ1
iHOPLRRIQ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:37:25 CEST 2017

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