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LRRIQ3 (leucine rich repeats and IQ motif containing 3)

Identity

Alias_namesLRRC44
leucine rich repeat containing 44
Alias_symbol (synonym)MGC22773
Other alias
HGNC (Hugo) LRRIQ3
LocusID (NCBI) 127255
Atlas_Id 68664
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 74026018 and ends at 74198187 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AHCYL1 (1p13.3) / LRRIQ3 (1p31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRIQ3   28318
Cards
Entrez_Gene (NCBI)LRRIQ3  127255  leucine rich repeats and IQ motif containing 3
AliasesLRRC44
GeneCards (Weizmann)LRRIQ3
Ensembl hg19 (Hinxton)ENSG00000162620 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162620 [Gene_View]  chr1:74026018-74198187 [Contig_View]  LRRIQ3 [Vega]
ICGC DataPortalENSG00000162620
TCGA cBioPortalLRRIQ3
AceView (NCBI)LRRIQ3
Genatlas (Paris)LRRIQ3
WikiGenes127255
SOURCE (Princeton)LRRIQ3
Genetics Home Reference (NIH)LRRIQ3
Genomic and cartography
GoldenPath hg38 (UCSC)LRRIQ3  -     chr1:74026018-74198187 -  1p31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRIQ3  -     1p31.1   [Description]    (hg19-Feb_2009)
EnsemblLRRIQ3 - 1p31.1 [CytoView hg19]  LRRIQ3 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBILRRIQ3 [Mapview hg19]  LRRIQ3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131476 BC020778 BC062795 BX647210
RefSeq transcript (Entrez)NM_001105659 NM_001322315 NM_145258
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRIQ3
Cluster EST : UnigeneHs.644625 [ NCBI ]
CGAP (NCI)Hs.644625
Alternative Splicing GalleryENSG00000162620
Gene ExpressionLRRIQ3 [ NCBI-GEO ]   LRRIQ3 [ EBI - ARRAY_EXPRESS ]   LRRIQ3 [ SEEK ]   LRRIQ3 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRIQ3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127255
GTEX Portal (Tissue expression)LRRIQ3
Human Protein AtlasENSG00000162620-LRRIQ3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6PVS8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6PVS8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6PVS8
Splice isoforms : SwissVarA6PVS8
PhosPhoSitePlusA6PVS8
Domaine pattern : Prosite (Expaxy)IQ (PS50096)    LRR (PS51450)   
Domains : Interpro (EBI)IQ_motif_EF-hand-BS    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_4   
Domain families : Pfam (Sanger)LRR_4 (PF12799)   
Domain families : Pfam (NCBI)pfam12799   
Conserved Domain (NCBI)LRRIQ3
DMDM Disease mutations127255
Blocks (Seattle)LRRIQ3
SuperfamilyA6PVS8
Human Protein Atlas [tissue]ENSG00000162620-LRRIQ3 [tissue]
Peptide AtlasA6PVS8
HPRD14485
IPIIPI00782960   IPI00076865   IPI00843761   IPI00852789   IPI00852663   IPI00852847   
Protein Interaction databases
DIP (DOE-UCLA)A6PVS8
IntAct (EBI)A6PVS8
FunCoupENSG00000162620
BioGRIDLRRIQ3
STRING (EMBL)LRRIQ3
ZODIACLRRIQ3
Ontologies - Pathways
QuickGOA6PVS8
Ontology : AmiGOprotein binding  
Ontology : EGO-EBI=/A>/T@>protein binding  
NDEx NetworkLRRIQ3
Atlas of Cancer Signalling NetworkLRRIQ3
Wikipedia pathwaysLRRIQ3
Orthology - Evolution
OrthoDB127255
GeneTree (enSembl)ENSG00000162620
Phylogenetic Trees/Animal Genes : TreeFamLRRIQ3
HOVERGENA6PVS8
HOGENOMA6PVS8
Homologs : HomoloGeneLRRIQ3
Homology/Alignments : Family Browser (UCSC)LRRIQ3
Gene fusions - Rearrangements
Fusion: Tumor Portal LRRIQ3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRIQ3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRIQ3
dbVarLRRIQ3
ClinVarLRRIQ3
1000_GenomesLRRIQ3 
Exome Variant ServerLRRIQ3
ExAC (Exome Aggregation Consortium)ENSG00000162620
GNOMAD BrowserENSG00000162620
Genetic variants : HAPMAP127255
Genomic Variants (DGV)LRRIQ3 [DGVbeta]
DECIPHERLRRIQ3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRIQ3 
Mutations
ICGC Data PortalLRRIQ3 
TCGA Data PortalLRRIQ3 
Broad Tumor PortalLRRIQ3
OASIS PortalLRRIQ3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRIQ3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRIQ3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRRIQ3
DgiDB (Drug Gene Interaction Database)LRRIQ3
DoCM (Curated mutations)LRRIQ3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRIQ3 (select a term)
intoGenLRRIQ3
Cancer3DLRRIQ3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRIQ3
Genetic Testing Registry LRRIQ3
NextProtA6PVS8 [Medical]
TSGene127255
GENETestsLRRIQ3
Target ValidationLRRIQ3
Huge Navigator LRRIQ3 [HugePedia]
snp3D : Map Gene to Disease127255
BioCentury BCIQLRRIQ3
ClinGenLRRIQ3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127255
Chemical/Pharm GKB GenePA162394627
Clinical trialLRRIQ3
Miscellaneous
canSAR (ICR)LRRIQ3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRIQ3
EVEXLRRIQ3
GoPubMedLRRIQ3
iHOPLRRIQ3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:11:48 CET 2017

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