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LRRIQ4 (leucine rich repeats and IQ motif containing 4)

Identity

Alias_symbol (synonym)LRRC64
Other alias
HGNC (Hugo) LRRIQ4
LocusID (NCBI) 344657
Atlas_Id 68665
Location 3q26.2  [Link to chromosome band 3q26]
Location_base_pair Starts at 169821922 and ends at 169837772 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRIQ4   34298
Cards
Entrez_Gene (NCBI)LRRIQ4  344657  leucine rich repeats and IQ motif containing 4
AliasesLRRC64
GeneCards (Weizmann)LRRIQ4
Ensembl hg19 (Hinxton)ENSG00000188306 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188306 [Gene_View]  chr3:169821922-169837772 [Contig_View]  LRRIQ4 [Vega]
ICGC DataPortalENSG00000188306
TCGA cBioPortalLRRIQ4
AceView (NCBI)LRRIQ4
Genatlas (Paris)LRRIQ4
WikiGenes344657
SOURCE (Princeton)LRRIQ4
Genetics Home Reference (NIH)LRRIQ4
Genomic and cartography
GoldenPath hg38 (UCSC)LRRIQ4  -     chr3:169821922-169837772 +  3q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRIQ4  -     3q26.2   [Description]    (hg19-Feb_2009)
EnsemblLRRIQ4 - 3q26.2 [CytoView hg19]  LRRIQ4 - 3q26.2 [CytoView hg38]
Mapping of homologs : NCBILRRIQ4 [Mapview hg19]  LRRIQ4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080460
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRIQ4
Cluster EST : UnigeneHs.319484 [ NCBI ]
CGAP (NCI)Hs.319484
Alternative Splicing GalleryENSG00000188306
Gene ExpressionLRRIQ4 [ NCBI-GEO ]   LRRIQ4 [ EBI - ARRAY_EXPRESS ]   LRRIQ4 [ SEEK ]   LRRIQ4 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRIQ4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)344657
GTEX Portal (Tissue expression)LRRIQ4
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NIV6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NIV6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NIV6
Splice isoforms : SwissVarA6NIV6
PhosPhoSitePlusA6NIV6
Domaine pattern : Prosite (Expaxy)IQ (PS50096)    LRR (PS51450)   
Domains : Interpro (EBI)IQ_motif_EF-hand-BS    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_4    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_4 (PF12799)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam12799    pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRIQ4
DMDM Disease mutations344657
Blocks (Seattle)LRRIQ4
SuperfamilyA6NIV6
Human Protein AtlasENSG00000188306
Peptide AtlasA6NIV6
IPIIPI00233524   
Protein Interaction databases
DIP (DOE-UCLA)A6NIV6
IntAct (EBI)A6NIV6
FunCoupENSG00000188306
BioGRIDLRRIQ4
STRING (EMBL)LRRIQ4
ZODIACLRRIQ4
Ontologies - Pathways
QuickGOA6NIV6
Ontology : AmiGOvolume-sensitive anion channel activity  cytoplasm  plasma membrane  signal transduction  ion channel complex  regulation of anion transport  anion transmembrane transport  
Ontology : EGO-EBIvolume-sensitive anion channel activity  cytoplasm  plasma membrane  signal transduction  ion channel complex  regulation of anion transport  anion transmembrane transport  
NDEx NetworkLRRIQ4
Atlas of Cancer Signalling NetworkLRRIQ4
Wikipedia pathwaysLRRIQ4
Orthology - Evolution
OrthoDB344657
GeneTree (enSembl)ENSG00000188306
Phylogenetic Trees/Animal Genes : TreeFamLRRIQ4
HOVERGENA6NIV6
HOGENOMA6NIV6
Homologs : HomoloGeneLRRIQ4
Homology/Alignments : Family Browser (UCSC)LRRIQ4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRIQ4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRIQ4
dbVarLRRIQ4
ClinVarLRRIQ4
1000_GenomesLRRIQ4 
Exome Variant ServerLRRIQ4
ExAC (Exome Aggregation Consortium)LRRIQ4 (select the gene name)
Genetic variants : HAPMAP344657
Genomic Variants (DGV)LRRIQ4 [DGVbeta]
DECIPHERLRRIQ4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRIQ4 
Mutations
ICGC Data PortalLRRIQ4 
TCGA Data PortalLRRIQ4 
Broad Tumor PortalLRRIQ4
OASIS PortalLRRIQ4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRIQ4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRIQ4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRRIQ4
DgiDB (Drug Gene Interaction Database)LRRIQ4
DoCM (Curated mutations)LRRIQ4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRIQ4 (select a term)
intoGenLRRIQ4
Cancer3DLRRIQ4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRIQ4
Genetic Testing Registry LRRIQ4
NextProtA6NIV6 [Medical]
TSGene344657
GENETestsLRRIQ4
Target ValidationLRRIQ4
Huge Navigator LRRIQ4 [HugePedia]
snp3D : Map Gene to Disease344657
BioCentury BCIQLRRIQ4
ClinGenLRRIQ4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD344657
Chemical/Pharm GKB GenePA162394647
Clinical trialLRRIQ4
Miscellaneous
canSAR (ICR)LRRIQ4 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRIQ4
EVEXLRRIQ4
GoPubMedLRRIQ4
iHOPLRRIQ4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:25:04 CEST 2017

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