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LRRN4 (leucine rich repeat neuronal 4)

Identity

Alias_namesC20orf75
chromosome 20 open reading frame 75
Alias_symbol (synonym)dJ1056H1.1
NLRR4
Other aliasNLRR-4
HGNC (Hugo) LRRN4
LocusID (NCBI) 164312
Atlas_Id 68669
Location 20p12.3  [Link to chromosome band 20p12]
Location_base_pair Starts at 6040546 and ends at 6054080 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LRRN4 (20p12.3) / MCM8 (20p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRN4   16208
Cards
Entrez_Gene (NCBI)LRRN4  164312  leucine rich repeat neuronal 4
AliasesC20orf75; NLRR-4; NLRR4; dJ1056H1.1
GeneCards (Weizmann)LRRN4
Ensembl hg19 (Hinxton)ENSG00000125872 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125872 [Gene_View]  chr20:6040546-6054080 [Contig_View]  LRRN4 [Vega]
ICGC DataPortalENSG00000125872
TCGA cBioPortalLRRN4
AceView (NCBI)LRRN4
Genatlas (Paris)LRRN4
WikiGenes164312
SOURCE (Princeton)LRRN4
Genetics Home Reference (NIH)LRRN4
Genomic and cartography
GoldenPath hg38 (UCSC)LRRN4  -     chr20:6040546-6054080 -  20p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRN4  -     20p12.3   [Description]    (hg19-Feb_2009)
EnsemblLRRN4 - 20p12.3 [CytoView hg19]  LRRN4 - 20p12.3 [CytoView hg38]
Mapping of homologs : NCBILRRN4 [Mapview hg19]  LRRN4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA464555 AK172833 AK290123 BC019612 BC027720
RefSeq transcript (Entrez)NM_152611
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRN4
Cluster EST : UnigeneHs.741928 [ NCBI ]
CGAP (NCI)Hs.741928
Alternative Splicing GalleryENSG00000125872
Gene ExpressionLRRN4 [ NCBI-GEO ]   LRRN4 [ EBI - ARRAY_EXPRESS ]   LRRN4 [ SEEK ]   LRRN4 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRN4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)164312
GTEX Portal (Tissue expression)LRRN4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUT4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUT4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUT4
Splice isoforms : SwissVarQ8WUT4
PhosPhoSitePlusQ8WUT4
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)FN3_dom    Ig-like_fold    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)fn3 (PF00041)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam00041    pfam13855   
Domain families : Smart (EMBL)FN3 (SM00060)  LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRN4
DMDM Disease mutations164312
Blocks (Seattle)LRRN4
SuperfamilyQ8WUT4
Human Protein AtlasENSG00000125872
Peptide AtlasQ8WUT4
HPRD12784
IPIIPI00216345   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUT4
IntAct (EBI)Q8WUT4
FunCoupENSG00000125872
BioGRIDLRRN4
STRING (EMBL)LRRN4
ZODIACLRRN4
Ontologies - Pathways
QuickGOQ8WUT4
Ontology : AmiGOintegral component of plasma membrane  long-term memory  visual learning  extracellular exosome  
Ontology : EGO-EBIintegral component of plasma membrane  long-term memory  visual learning  extracellular exosome  
NDEx NetworkLRRN4
Atlas of Cancer Signalling NetworkLRRN4
Wikipedia pathwaysLRRN4
Orthology - Evolution
OrthoDB164312
GeneTree (enSembl)ENSG00000125872
Phylogenetic Trees/Animal Genes : TreeFamLRRN4
HOVERGENQ8WUT4
HOGENOMQ8WUT4
Homologs : HomoloGeneLRRN4
Homology/Alignments : Family Browser (UCSC)LRRN4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRN4
dbVarLRRN4
ClinVarLRRN4
1000_GenomesLRRN4 
Exome Variant ServerLRRN4
ExAC (Exome Aggregation Consortium)LRRN4 (select the gene name)
Genetic variants : HAPMAP164312
Genomic Variants (DGV)LRRN4 [DGVbeta]
DECIPHERLRRN4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRN4 
Mutations
ICGC Data PortalLRRN4 
TCGA Data PortalLRRN4 
Broad Tumor PortalLRRN4
OASIS PortalLRRN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRN4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRN4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRRN4
DgiDB (Drug Gene Interaction Database)LRRN4
DoCM (Curated mutations)LRRN4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRN4 (select a term)
intoGenLRRN4
Cancer3DLRRN4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRN4
Genetic Testing Registry LRRN4
NextProtQ8WUT4 [Medical]
TSGene164312
GENETestsLRRN4
Target ValidationLRRN4
Huge Navigator LRRN4 [HugePedia]
snp3D : Map Gene to Disease164312
BioCentury BCIQLRRN4
ClinGenLRRN4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD164312
Chemical/Pharm GKB GenePA162394670
Clinical trialLRRN4
Miscellaneous
canSAR (ICR)LRRN4 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRN4
EVEXLRRN4
GoPubMedLRRN4
iHOPLRRN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:25:05 CEST 2017

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