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LRRN4CL (LRRN4 C-terminal like)

Identity

Other alias-
HGNC (Hugo) LRRN4CL
LocusID (NCBI) 221091
Atlas_Id 68670
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62686402 and ends at 62689899 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRN4CL   33724
Cards
Entrez_Gene (NCBI)LRRN4CL  221091  LRRN4 C-terminal like
Aliases
GeneCards (Weizmann)LRRN4CL
Ensembl hg19 (Hinxton)ENSG00000177363 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177363 [Gene_View]  chr11:62686402-62689899 [Contig_View]  LRRN4CL [Vega]
ICGC DataPortalENSG00000177363
TCGA cBioPortalLRRN4CL
AceView (NCBI)LRRN4CL
Genatlas (Paris)LRRN4CL
WikiGenes221091
SOURCE (Princeton)LRRN4CL
Genetics Home Reference (NIH)LRRN4CL
Genomic and cartography
GoldenPath hg38 (UCSC)LRRN4CL  -     chr11:62686402-62689899 -  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRN4CL  -     11q12.3   [Description]    (hg19-Feb_2009)
EnsemblLRRN4CL - 11q12.3 [CytoView hg19]  LRRN4CL - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBILRRN4CL [Mapview hg19]  LRRN4CL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK291334 AL834319 AY358354 BC053902 BQ678065
RefSeq transcript (Entrez)NM_203422
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRN4CL
Cluster EST : UnigeneHs.427449 [ NCBI ]
CGAP (NCI)Hs.427449
Alternative Splicing GalleryENSG00000177363
Gene ExpressionLRRN4CL [ NCBI-GEO ]   LRRN4CL [ EBI - ARRAY_EXPRESS ]   LRRN4CL [ SEEK ]   LRRN4CL [ MEM ]
Gene Expression Viewer (FireBrowse)LRRN4CL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221091
GTEX Portal (Tissue expression)LRRN4CL
Human Protein AtlasENSG00000177363-LRRN4CL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8ND94   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8ND94  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8ND94
Splice isoforms : SwissVarQ8ND94
PhosPhoSitePlusQ8ND94
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)FN3_dom    Ig-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)FN3 (SM00060)  
Conserved Domain (NCBI)LRRN4CL
DMDM Disease mutations221091
Blocks (Seattle)LRRN4CL
SuperfamilyQ8ND94
Human Protein Atlas [tissue]ENSG00000177363-LRRN4CL [tissue]
Peptide AtlasQ8ND94
HPRD17322
IPIIPI00168503   
Protein Interaction databases
DIP (DOE-UCLA)Q8ND94
IntAct (EBI)Q8ND94
FunCoupENSG00000177363
BioGRIDLRRN4CL
STRING (EMBL)LRRN4CL
ZODIACLRRN4CL
Ontologies - Pathways
QuickGOQ8ND94
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkLRRN4CL
Atlas of Cancer Signalling NetworkLRRN4CL
Wikipedia pathwaysLRRN4CL
Orthology - Evolution
OrthoDB221091
GeneTree (enSembl)ENSG00000177363
Phylogenetic Trees/Animal Genes : TreeFamLRRN4CL
HOVERGENQ8ND94
HOGENOMQ8ND94
Homologs : HomoloGeneLRRN4CL
Homology/Alignments : Family Browser (UCSC)LRRN4CL
Gene fusions - Rearrangements
Fusion: Tumor Portal LRRN4CL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRN4CL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRN4CL
dbVarLRRN4CL
ClinVarLRRN4CL
1000_GenomesLRRN4CL 
Exome Variant ServerLRRN4CL
ExAC (Exome Aggregation Consortium)ENSG00000177363
GNOMAD BrowserENSG00000177363
Genetic variants : HAPMAP221091
Genomic Variants (DGV)LRRN4CL [DGVbeta]
DECIPHERLRRN4CL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRN4CL 
Mutations
ICGC Data PortalLRRN4CL 
TCGA Data PortalLRRN4CL 
Broad Tumor PortalLRRN4CL
OASIS PortalLRRN4CL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRN4CL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRN4CL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRRN4CL
DgiDB (Drug Gene Interaction Database)LRRN4CL
DoCM (Curated mutations)LRRN4CL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRN4CL (select a term)
intoGenLRRN4CL
Cancer3DLRRN4CL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLRRN4CL
Genetic Testing Registry LRRN4CL
NextProtQ8ND94 [Medical]
TSGene221091
GENETestsLRRN4CL
Target ValidationLRRN4CL
Huge Navigator LRRN4CL [HugePedia]
snp3D : Map Gene to Disease221091
BioCentury BCIQLRRN4CL
ClinGenLRRN4CL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221091
Chemical/Pharm GKB GenePA162394685
Clinical trialLRRN4CL
Miscellaneous
canSAR (ICR)LRRN4CL (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRN4CL
EVEXLRRN4CL
GoPubMedLRRN4CL
iHOPLRRN4CL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:11:48 CET 2017

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