Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LRRTM2 (leucine rich repeat transmembrane neuronal 2)

Identity

Alias_symbol (synonym)KIAA0416
Other alias-
HGNC (Hugo) LRRTM2
LocusID (NCBI) 26045
Atlas_Id 68672
Location 5q31.2  [Link to chromosome band 5q31]
Location_base_pair Starts at 138869390 and ends at 138875368 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LRRTM2   19409
Cards
Entrez_Gene (NCBI)LRRTM2  26045  leucine rich repeat transmembrane neuronal 2
Aliases
GeneCards (Weizmann)LRRTM2
Ensembl hg19 (Hinxton)ENSG00000146006 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146006 [Gene_View]  chr5:138869390-138875368 [Contig_View]  LRRTM2 [Vega]
ICGC DataPortalENSG00000146006
TCGA cBioPortalLRRTM2
AceView (NCBI)LRRTM2
Genatlas (Paris)LRRTM2
WikiGenes26045
SOURCE (Princeton)LRRTM2
Genetics Home Reference (NIH)LRRTM2
Genomic and cartography
GoldenPath hg38 (UCSC)LRRTM2  -     chr5:138869390-138875368 -  5q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRTM2  -     5q31.2   [Description]    (hg19-Feb_2009)
EnsemblLRRTM2 - 5q31.2 [CytoView hg19]  LRRTM2 - 5q31.2 [CytoView hg38]
Mapping of homologs : NCBILRRTM2 [Mapview hg19]  LRRTM2 [Mapview hg38]
OMIM610868   
Gene and transcription
Genbank (Entrez)AB007876 AK291064 AK297332 AK309790 AY182026
RefSeq transcript (Entrez)NM_015564
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRTM2
Cluster EST : UnigeneHs.656653 [ NCBI ]
CGAP (NCI)Hs.656653
Alternative Splicing GalleryENSG00000146006
Gene ExpressionLRRTM2 [ NCBI-GEO ]   LRRTM2 [ EBI - ARRAY_EXPRESS ]   LRRTM2 [ SEEK ]   LRRTM2 [ MEM ]
Gene Expression Viewer (FireBrowse)LRRTM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26045
GTEX Portal (Tissue expression)LRRTM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43300   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43300  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43300
Splice isoforms : SwissVarO43300
PhosPhoSitePlusO43300
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)LRRTM2
DMDM Disease mutations26045
Blocks (Seattle)LRRTM2
SuperfamilyO43300
Human Protein AtlasENSG00000146006
Peptide AtlasO43300
HPRD17454
IPIIPI00023576   IPI00981346   IPI00973893   
Protein Interaction databases
DIP (DOE-UCLA)O43300
IntAct (EBI)O43300
FunCoupENSG00000146006
BioGRIDLRRTM2
STRING (EMBL)LRRTM2
ZODIACLRRTM2
Ontologies - Pathways
QuickGOO43300
Ontology : AmiGOnegative regulation of receptor internalization  integral component of membrane  cell junction  neurexin family protein binding  postsynaptic membrane  synapse organization  positive regulation of synapse assembly  excitatory synapse  long-term synaptic potentiation  
Ontology : EGO-EBInegative regulation of receptor internalization  integral component of membrane  cell junction  neurexin family protein binding  postsynaptic membrane  synapse organization  positive regulation of synapse assembly  excitatory synapse  long-term synaptic potentiation  
NDEx NetworkLRRTM2
Atlas of Cancer Signalling NetworkLRRTM2
Wikipedia pathwaysLRRTM2
Orthology - Evolution
OrthoDB26045
GeneTree (enSembl)ENSG00000146006
Phylogenetic Trees/Animal Genes : TreeFamLRRTM2
HOVERGENO43300
HOGENOMO43300
Homologs : HomoloGeneLRRTM2
Homology/Alignments : Family Browser (UCSC)LRRTM2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLRRTM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LRRTM2
dbVarLRRTM2
ClinVarLRRTM2
1000_GenomesLRRTM2 
Exome Variant ServerLRRTM2
ExAC (Exome Aggregation Consortium)LRRTM2 (select the gene name)
Genetic variants : HAPMAP26045
Genomic Variants (DGV)LRRTM2 [DGVbeta]
DECIPHERLRRTM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLRRTM2 
Mutations
ICGC Data PortalLRRTM2 
TCGA Data PortalLRRTM2 
Broad Tumor PortalLRRTM2
OASIS PortalLRRTM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLRRTM2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLRRTM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LRRTM2
DgiDB (Drug Gene Interaction Database)LRRTM2
DoCM (Curated mutations)LRRTM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LRRTM2 (select a term)
intoGenLRRTM2
Cancer3DLRRTM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610868   
Orphanet
MedgenLRRTM2
Genetic Testing Registry LRRTM2
NextProtO43300 [Medical]
TSGene26045
GENETestsLRRTM2
Target ValidationLRRTM2
Huge Navigator LRRTM2 [HugePedia]
snp3D : Map Gene to Disease26045
BioCentury BCIQLRRTM2
ClinGenLRRTM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26045
Chemical/Pharm GKB GenePA134993038
Clinical trialLRRTM2
Miscellaneous
canSAR (ICR)LRRTM2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRTM2
EVEXLRRTM2
GoPubMedLRRTM2
iHOPLRRTM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:38 CEST 2017

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