Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LSAMP-AS1 (LSAMP antisense RNA 1)

Identity

Alias_namesLSAMP antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) LSAMP-AS1
LocusID (NCBI) 101926903
Atlas_Id 68680
Location 3q13.31  [Link to chromosome band 3q13]
Location_base_pair Starts at 116360024 and ends at 116370085 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LSAMP-AS1   40350
Cards
Entrez_Gene (NCBI)LSAMP-AS1  101926903  LSAMP antisense RNA 1
Aliases
GeneCards (Weizmann)LSAMP-AS1
Ensembl hg19 (Hinxton)ENSG00000240922 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240922 [Gene_View]  chr3:116360024-116370085 [Contig_View]  LSAMP-AS1 [Vega]
ICGC DataPortalENSG00000240922
TCGA cBioPortalLSAMP-AS1
AceView (NCBI)LSAMP-AS1
Genatlas (Paris)LSAMP-AS1
WikiGenes101926903
SOURCE (Princeton)LSAMP-AS1
Genetics Home Reference (NIH)LSAMP-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)LSAMP-AS1  -     chr3:116360024-116370085 +  3q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LSAMP-AS1  -     3q13.31   [Description]    (hg19-Feb_2009)
EnsemblLSAMP-AS1 - 3q13.31 [CytoView hg19]  LSAMP-AS1 - 3q13.31 [CytoView hg38]
Mapping of homologs : NCBILSAMP-AS1 [Mapview hg19]  LSAMP-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX110108
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LSAMP-AS1
Cluster EST : UnigeneHs.26479 [ NCBI ]
CGAP (NCI)Hs.26479
Alternative Splicing GalleryENSG00000240922
Gene ExpressionLSAMP-AS1 [ NCBI-GEO ]   LSAMP-AS1 [ EBI - ARRAY_EXPRESS ]   LSAMP-AS1 [ SEEK ]   LSAMP-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)LSAMP-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101926903
GTEX Portal (Tissue expression)LSAMP-AS1
Human Protein AtlasENSG00000240922-LSAMP-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LSAMP-AS1
DMDM Disease mutations101926903
Blocks (Seattle)LSAMP-AS1
Human Protein Atlas [tissue]ENSG00000240922-LSAMP-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000240922
BioGRIDLSAMP-AS1
STRING (EMBL)LSAMP-AS1
ZODIACLSAMP-AS1
Ontologies - Pathways
Huge Navigator LSAMP-AS1 [HugePedia]
snp3D : Map Gene to Disease101926903
BioCentury BCIQLSAMP-AS1
ClinGenLSAMP-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101926903
Clinical trialLSAMP-AS1
Miscellaneous
canSAR (ICR)LSAMP-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLSAMP-AS1
EVEXLSAMP-AS1
GoPubMedLSAMP-AS1
iHOPLSAMP-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:11:50 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.