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LSAMP (limbic system-associated membrane protein)

Identity

Alias_symbol (synonym)LAMP
IGLON3
Other alias
HGNC (Hugo) LSAMP
LocusID (NCBI) 4045
Atlas_Id 51101
Location 3q13.31  [Link to chromosome band 3q13]
Location_base_pair Starts at 115802363 and ends at 116445538 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADK (10q22.2) / LSAMP (3q13.31)GSK3B (3q13.33) / LSAMP (3q13.31)LSAMP (3q13.31) / C3orf70 (3q27.2)
LSAMP (3q13.31) / CELSR1 (22q13.31)LSAMP (3q13.31) / CRHR2 (7p14.3)LSAMP (3q13.31) / GAP43 (3q13.31)
LSAMP (3q13.31) / LSAMP (3q13.31)LSAMP (3q13.31) / STAG1 (3q22.3)RASSF5 (1q32.1) / LSAMP (3q13.31)
TM6SF1 (15q25.2) / LSAMP (3q13.31)TMCC1 (3q22.1) / LSAMP (3q13.31)ZBTB20 (3q13.31) / LSAMP (3q13.31)
GSK3B 3q13.33 / LSAMP 3q13.31LSAMP 3q13.31 / C3orf70 3q27.2LSAMP 3q13.31 / GAP43 3q13.31
TMCC1 3q22.1 / LSAMP 3q13.31ZBTB20 3q13.31 / LSAMP 3q13.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LSAMP   6705
Cards
Entrez_Gene (NCBI)LSAMP  4045  limbic system-associated membrane protein
AliasesIGLON3; LAMP
GeneCards (Weizmann)LSAMP
Ensembl hg19 (Hinxton)ENSG00000185565 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185565 [Gene_View]  chr3:115802363-116445538 [Contig_View]  LSAMP [Vega]
ICGC DataPortalENSG00000185565
TCGA cBioPortalLSAMP
AceView (NCBI)LSAMP
Genatlas (Paris)LSAMP
WikiGenes4045
SOURCE (Princeton)LSAMP
Genetics Home Reference (NIH)LSAMP
Genomic and cartography
GoldenPath hg38 (UCSC)LSAMP  -     chr3:115802363-116445538 -  3q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LSAMP  -     3q13.31   [Description]    (hg19-Feb_2009)
EnsemblLSAMP - 3q13.31 [CytoView hg19]  LSAMP - 3q13.31 [CytoView hg38]
Mapping of homologs : NCBILSAMP [Mapview hg19]  LSAMP [Mapview hg38]
OMIM603241   
Gene and transcription
Genbank (Entrez)AA702209 AK091573 AK092715 AK094535 AK299851
RefSeq transcript (Entrez)NM_001318915 NM_002338
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LSAMP
Cluster EST : UnigeneHs.723683 [ NCBI ]
CGAP (NCI)Hs.723683
Alternative Splicing GalleryENSG00000185565
Gene ExpressionLSAMP [ NCBI-GEO ]   LSAMP [ EBI - ARRAY_EXPRESS ]   LSAMP [ SEEK ]   LSAMP [ MEM ]
Gene Expression Viewer (FireBrowse)LSAMP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4045
GTEX Portal (Tissue expression)LSAMP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13449   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13449  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13449
Splice isoforms : SwissVarQ13449
PhosPhoSitePlusQ13449
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)I-set (PF07679)   
Domain families : Pfam (NCBI)pfam07679   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)LSAMP
DMDM Disease mutations4045
Blocks (Seattle)LSAMP
SuperfamilyQ13449
Human Protein AtlasENSG00000185565
Peptide AtlasQ13449
HPRD09128
IPIIPI00013303   IPI00921923   IPI00947205   
Protein Interaction databases
DIP (DOE-UCLA)Q13449
IntAct (EBI)Q13449
FunCoupENSG00000185565
BioGRIDLSAMP
STRING (EMBL)LSAMP
ZODIACLSAMP
Ontologies - Pathways
QuickGOQ13449
Ontology : AmiGOprotein binding  extracellular region  plasma membrane  C-terminal protein lipidation  cell adhesion  nervous system development  anchored component of membrane  locomotory exploration behavior  
Ontology : EGO-EBIprotein binding  extracellular region  plasma membrane  C-terminal protein lipidation  cell adhesion  nervous system development  anchored component of membrane  locomotory exploration behavior  
NDEx NetworkLSAMP
Atlas of Cancer Signalling NetworkLSAMP
Wikipedia pathwaysLSAMP
Orthology - Evolution
OrthoDB4045
GeneTree (enSembl)ENSG00000185565
Phylogenetic Trees/Animal Genes : TreeFamLSAMP
HOVERGENQ13449
HOGENOMQ13449
Homologs : HomoloGeneLSAMP
Homology/Alignments : Family Browser (UCSC)LSAMP
Gene fusions - Rearrangements
Fusion : MitelmanGSK3B/LSAMP [3q13.33/3q13.31]  [t(3;3)(q13;q13)]  
Fusion : MitelmanLSAMP/C3orf70 [3q13.31/3q27.2]  [t(3;3)(q13;q27)]  
Fusion : MitelmanLSAMP/CELSR1 [3q13.31/22q13.31]  [t(3;22)(q13;q13)]  
Fusion : MitelmanLSAMP/GAP43 [3q13.31/3q13.31]  [t(3;3)(q13;q13)]  
Fusion : MitelmanLSAMP/STAG1 [3q13.31/3q22.3]  [t(3;3)(q13;q22)]  
Fusion : MitelmanTMCC1/LSAMP [3q22.1/3q13.31]  [t(3;3)(q13;q22)]  
Fusion : MitelmanZBTB20/LSAMP [3q13.31/3q13.31]  [t(3;3)(q13;q13)]  
Fusion: TCGAGSK3B 3q13.33 LSAMP 3q13.31 BRCA
Fusion: TCGALSAMP 3q13.31 C3orf70 3q27.2 BRCA
Fusion: TCGALSAMP 3q13.31 GAP43 3q13.31 BRCA
Fusion: TCGATMCC1 3q22.1 LSAMP 3q13.31 LUSC
Fusion: TCGAZBTB20 3q13.31 LSAMP 3q13.31 KIRC LGG LUAD PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLSAMP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LSAMP
dbVarLSAMP
ClinVarLSAMP
1000_GenomesLSAMP 
Exome Variant ServerLSAMP
ExAC (Exome Aggregation Consortium)LSAMP (select the gene name)
Genetic variants : HAPMAP4045
Genomic Variants (DGV)LSAMP [DGVbeta]
DECIPHERLSAMP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLSAMP 
Mutations
ICGC Data PortalLSAMP 
TCGA Data PortalLSAMP 
Broad Tumor PortalLSAMP
OASIS PortalLSAMP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLSAMP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLSAMP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LSAMP
DgiDB (Drug Gene Interaction Database)LSAMP
DoCM (Curated mutations)LSAMP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LSAMP (select a term)
intoGenLSAMP
Cancer3DLSAMP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603241   
Orphanet
MedgenLSAMP
Genetic Testing Registry LSAMP
NextProtQ13449 [Medical]
TSGene4045
GENETestsLSAMP
Huge Navigator LSAMP [HugePedia]
snp3D : Map Gene to Disease4045
BioCentury BCIQLSAMP
ClinGenLSAMP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4045
Chemical/Pharm GKB GenePA30470
Clinical trialLSAMP
Miscellaneous
canSAR (ICR)LSAMP (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLSAMP
EVEXLSAMP
GoPubMedLSAMP
iHOPLSAMP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:23:34 CEST 2017

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