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LSG1 (large 60S subunit nuclear export GTPase 1)

Identity

Alias_nameslarge subunit GTPase 1 homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ11301
Other alias-
HGNC (Hugo) LSG1
LocusID (NCBI) 55341
Atlas_Id 68681
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 194640788 and ends at 194672477 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMEM44 (3q29) / LSG1 (3q29)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LSG1   25652
Cards
Entrez_Gene (NCBI)LSG1  55341  large 60S subunit nuclear export GTPase 1
Aliases
GeneCards (Weizmann)LSG1
Ensembl hg19 (Hinxton)ENSG00000041802 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000041802 [Gene_View]  chr3:194640788-194672477 [Contig_View]  LSG1 [Vega]
ICGC DataPortalENSG00000041802
TCGA cBioPortalLSG1
AceView (NCBI)LSG1
Genatlas (Paris)LSG1
WikiGenes55341
SOURCE (Princeton)LSG1
Genetics Home Reference (NIH)LSG1
Genomic and cartography
GoldenPath hg38 (UCSC)LSG1  -     chr3:194640788-194672477 -  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LSG1  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblLSG1 - 3q29 [CytoView hg19]  LSG1 - 3q29 [CytoView hg38]
Mapping of homologs : NCBILSG1 [Mapview hg19]  LSG1 [Mapview hg38]
OMIM610780   
Gene and transcription
Genbank (Entrez)AK002163 AK130804 AK225094 AL136897 AM392577
RefSeq transcript (Entrez)NM_018385
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LSG1
Cluster EST : UnigeneHs.744061 [ NCBI ]
CGAP (NCI)Hs.744061
Alternative Splicing GalleryENSG00000041802
Gene ExpressionLSG1 [ NCBI-GEO ]   LSG1 [ EBI - ARRAY_EXPRESS ]   LSG1 [ SEEK ]   LSG1 [ MEM ]
Gene Expression Viewer (FireBrowse)LSG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55341
GTEX Portal (Tissue expression)LSG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H089   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H089  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H089
Splice isoforms : SwissVarQ9H089
PhosPhoSitePlusQ9H089
Domaine pattern : Prosite (Expaxy)G_CP (PS51721)   
Domains : Interpro (EBI)G_CP_dom    GTP-bd_ortho_bundle    GTP_binding_domain    P-loop_NTPase   
Domain families : Pfam (Sanger)MMR_HSR1 (PF01926)   
Domain families : Pfam (NCBI)pfam01926   
Conserved Domain (NCBI)LSG1
DMDM Disease mutations55341
Blocks (Seattle)LSG1
SuperfamilyQ9H089
Human Protein AtlasENSG00000041802
Peptide AtlasQ9H089
HPRD07748
IPIIPI00300094   IPI00926855   IPI00926623   
Protein Interaction databases
DIP (DOE-UCLA)Q9H089
IntAct (EBI)Q9H089
FunCoupENSG00000041802
BioGRIDLSG1
STRING (EMBL)LSG1
ZODIACLSG1
Ontologies - Pathways
QuickGOQ9H089
Ontology : AmiGOGTPase activity  GTP binding  nucleus  endoplasmic reticulum  cytosol  Cajal body  protein transport  membrane  nuclear body  nuclear export  
Ontology : EGO-EBIGTPase activity  GTP binding  nucleus  endoplasmic reticulum  cytosol  Cajal body  protein transport  membrane  nuclear body  nuclear export  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkLSG1
Atlas of Cancer Signalling NetworkLSG1
Wikipedia pathwaysLSG1
Orthology - Evolution
OrthoDB55341
GeneTree (enSembl)ENSG00000041802
Phylogenetic Trees/Animal Genes : TreeFamLSG1
HOVERGENQ9H089
HOGENOMQ9H089
Homologs : HomoloGeneLSG1
Homology/Alignments : Family Browser (UCSC)LSG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLSG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LSG1
dbVarLSG1
ClinVarLSG1
1000_GenomesLSG1 
Exome Variant ServerLSG1
ExAC (Exome Aggregation Consortium)LSG1 (select the gene name)
Genetic variants : HAPMAP55341
Genomic Variants (DGV)LSG1 [DGVbeta]
DECIPHERLSG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLSG1 
Mutations
ICGC Data PortalLSG1 
TCGA Data PortalLSG1 
Broad Tumor PortalLSG1
OASIS PortalLSG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLSG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLSG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LSG1
DgiDB (Drug Gene Interaction Database)LSG1
DoCM (Curated mutations)LSG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LSG1 (select a term)
intoGenLSG1
Cancer3DLSG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610780   
Orphanet
MedgenLSG1
Genetic Testing Registry LSG1
NextProtQ9H089 [Medical]
TSGene55341
GENETestsLSG1
Target ValidationLSG1
Huge Navigator LSG1 [HugePedia]
snp3D : Map Gene to Disease55341
BioCentury BCIQLSG1
ClinGenLSG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55341
Chemical/Pharm GKB GenePA142671501
Clinical trialLSG1
Miscellaneous
canSAR (ICR)LSG1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLSG1
EVEXLSG1
GoPubMedLSG1
iHOPLSG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:25:07 CEST 2017

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