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LSM10 (LSM10, U7 small nuclear RNA associated)

Identity

Alias_symbol (synonym)MGC15749
Other aliasMST074
MSTP074
HGNC (Hugo) LSM10
LocusID (NCBI) 84967
Atlas_Id 50921
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 36393420 and ends at 36397959 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LRRC23 (12p13.31) / LSM10 (1p34.3)LSM10 (1p34.3) / STK40 (1p34.3)NUMA1 (11q13.4) / LSM10 (1p34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LSM10   17562
Cards
Entrez_Gene (NCBI)LSM10  84967  LSM10, U7 small nuclear RNA associated
AliasesMST074; MSTP074
GeneCards (Weizmann)LSM10
Ensembl hg19 (Hinxton)ENSG00000181817 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181817 [Gene_View]  chr1:36393420-36397959 [Contig_View]  LSM10 [Vega]
ICGC DataPortalENSG00000181817
TCGA cBioPortalLSM10
AceView (NCBI)LSM10
Genatlas (Paris)LSM10
WikiGenes84967
SOURCE (Princeton)LSM10
Genetics Home Reference (NIH)LSM10
Genomic and cartography
GoldenPath hg38 (UCSC)LSM10  -     chr1:36393420-36397959 -  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LSM10  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblLSM10 - 1p34.3 [CytoView hg19]  LSM10 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBILSM10 [Mapview hg19]  LSM10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF166092 AF394685 AI150247 BC007623
RefSeq transcript (Entrez)NM_032881
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LSM10
Cluster EST : UnigeneHs.603131 [ NCBI ]
CGAP (NCI)Hs.603131
Alternative Splicing GalleryENSG00000181817
Gene ExpressionLSM10 [ NCBI-GEO ]   LSM10 [ EBI - ARRAY_EXPRESS ]   LSM10 [ SEEK ]   LSM10 [ MEM ]
Gene Expression Viewer (FireBrowse)LSM10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84967
GTEX Portal (Tissue expression)LSM10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969L4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969L4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969L4
Splice isoforms : SwissVarQ969L4
PhosPhoSitePlusQ969L4
Domains : Interpro (EBI)LSM_dom    LSM_dom_euk/arc   
Domain families : Pfam (Sanger)LSM (PF01423)   
Domain families : Pfam (NCBI)pfam01423   
Domain families : Smart (EMBL)Sm (SM00651)  
Conserved Domain (NCBI)LSM10
DMDM Disease mutations84967
Blocks (Seattle)LSM10
SuperfamilyQ969L4
Human Protein AtlasENSG00000181817
Peptide AtlasQ969L4
HPRD14326
IPIIPI00056416   
Protein Interaction databases
DIP (DOE-UCLA)Q969L4
IntAct (EBI)Q969L4
FunCoupENSG00000181817
BioGRIDLSM10
STRING (EMBL)LSM10
ZODIACLSM10
Ontologies - Pathways
QuickGOQ969L4
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  U7 snRNP  termination of RNA polymerase II transcription  mRNA processing  histone mRNA metabolic process  RNA splicing  Cajal body  nuclear body  histone pre-mRNA DCP binding  U7 snRNA binding  positive regulation of G1/S transition of mitotic cell cycle  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  U7 snRNP  termination of RNA polymerase II transcription  mRNA processing  histone mRNA metabolic process  RNA splicing  Cajal body  nuclear body  histone pre-mRNA DCP binding  U7 snRNA binding  positive regulation of G1/S transition of mitotic cell cycle  
NDEx NetworkLSM10
Atlas of Cancer Signalling NetworkLSM10
Wikipedia pathwaysLSM10
Orthology - Evolution
OrthoDB84967
GeneTree (enSembl)ENSG00000181817
Phylogenetic Trees/Animal Genes : TreeFamLSM10
HOVERGENQ969L4
HOGENOMQ969L4
Homologs : HomoloGeneLSM10
Homology/Alignments : Family Browser (UCSC)LSM10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLSM10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LSM10
dbVarLSM10
ClinVarLSM10
1000_GenomesLSM10 
Exome Variant ServerLSM10
ExAC (Exome Aggregation Consortium)LSM10 (select the gene name)
Genetic variants : HAPMAP84967
Genomic Variants (DGV)LSM10 [DGVbeta]
DECIPHERLSM10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLSM10 
Mutations
ICGC Data PortalLSM10 
TCGA Data PortalLSM10 
Broad Tumor PortalLSM10
OASIS PortalLSM10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLSM10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLSM10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LSM10
DgiDB (Drug Gene Interaction Database)LSM10
DoCM (Curated mutations)LSM10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LSM10 (select a term)
intoGenLSM10
Cancer3DLSM10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLSM10
Genetic Testing Registry LSM10
NextProtQ969L4 [Medical]
TSGene84967
GENETestsLSM10
Huge Navigator LSM10 [HugePedia]
snp3D : Map Gene to Disease84967
BioCentury BCIQLSM10
ClinGenLSM10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84967
Chemical/Pharm GKB GenePA134977215
Clinical trialLSM10
Miscellaneous
canSAR (ICR)LSM10 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLSM10
EVEXLSM10
GoPubMedLSM10
iHOPLSM10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:23:34 CEST 2017

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