Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LSM11 (LSM11, U7 small nuclear RNA associated)

Identity

Alias_namesLSM11 homolog, U7 small nuclear RNA associated (S. cerevisiae)
Alias_symbol (synonym)FLJ38273
Other alias-
HGNC (Hugo) LSM11
LocusID (NCBI) 134353
Atlas_Id 68683
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 157743695 and ends at 157760709 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LSM11   30860
Cards
Entrez_Gene (NCBI)LSM11  134353  LSM11, U7 small nuclear RNA associated
Aliases
GeneCards (Weizmann)LSM11
Ensembl hg19 (Hinxton)ENSG00000155858 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155858 [Gene_View]  chr5:157743695-157760709 [Contig_View]  LSM11 [Vega]
ICGC DataPortalENSG00000155858
TCGA cBioPortalLSM11
AceView (NCBI)LSM11
Genatlas (Paris)LSM11
WikiGenes134353
SOURCE (Princeton)LSM11
Genetics Home Reference (NIH)LSM11
Genomic and cartography
GoldenPath hg38 (UCSC)LSM11  -     chr5:157743695-157760709 +  5q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LSM11  -     5q33.3   [Description]    (hg19-Feb_2009)
EnsemblLSM11 - 5q33.3 [CytoView hg19]  LSM11 - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBILSM11 [Mapview hg19]  LSM11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI271367 AK023159 AK055297 AK095592 AK123951
RefSeq transcript (Entrez)NM_173491
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LSM11
Cluster EST : UnigeneHs.631954 [ NCBI ]
CGAP (NCI)Hs.631954
Alternative Splicing GalleryENSG00000155858
Gene ExpressionLSM11 [ NCBI-GEO ]   LSM11 [ EBI - ARRAY_EXPRESS ]   LSM11 [ SEEK ]   LSM11 [ MEM ]
Gene Expression Viewer (FireBrowse)LSM11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134353
GTEX Portal (Tissue expression)LSM11
Protein : pattern, domain, 3D structure
UniProt/SwissProtP83369   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP83369  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP83369
Splice isoforms : SwissVarP83369
PhosPhoSitePlusP83369
Domains : Interpro (EBI)Lsm11_M    LSM_dom    LSM_dom_euk/arc   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)Sm (SM00651)  
Conserved Domain (NCBI)LSM11
DMDM Disease mutations134353
Blocks (Seattle)LSM11
SuperfamilyP83369
Human Protein AtlasENSG00000155858
Peptide AtlasP83369
HPRD11289
IPIIPI00383729   
Protein Interaction databases
DIP (DOE-UCLA)P83369
IntAct (EBI)P83369
FunCoupENSG00000155858
BioGRIDLSM11
STRING (EMBL)LSM11
ZODIACLSM11
Ontologies - Pathways
QuickGOP83369
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  U7 snRNP  U7 snRNP  telomerase holoenzyme complex  termination of RNA polymerase II transcription  mRNA 3'-end processing by stem-loop binding and cleavage  mRNA 3'-end processing by stem-loop binding and cleavage  histone mRNA metabolic process  nuclear body  histone pre-mRNA 3'end processing complex  U7 snRNA binding  U7 snRNA binding  positive regulation of G1/S transition of mitotic cell cycle  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  U7 snRNP  U7 snRNP  telomerase holoenzyme complex  termination of RNA polymerase II transcription  mRNA 3'-end processing by stem-loop binding and cleavage  mRNA 3'-end processing by stem-loop binding and cleavage  histone mRNA metabolic process  nuclear body  histone pre-mRNA 3'end processing complex  U7 snRNA binding  U7 snRNA binding  positive regulation of G1/S transition of mitotic cell cycle  
NDEx NetworkLSM11
Atlas of Cancer Signalling NetworkLSM11
Wikipedia pathwaysLSM11
Orthology - Evolution
OrthoDB134353
GeneTree (enSembl)ENSG00000155858
Phylogenetic Trees/Animal Genes : TreeFamLSM11
HOVERGENP83369
HOGENOMP83369
Homologs : HomoloGeneLSM11
Homology/Alignments : Family Browser (UCSC)LSM11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLSM11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LSM11
dbVarLSM11
ClinVarLSM11
1000_GenomesLSM11 
Exome Variant ServerLSM11
ExAC (Exome Aggregation Consortium)LSM11 (select the gene name)
Genetic variants : HAPMAP134353
Genomic Variants (DGV)LSM11 [DGVbeta]
DECIPHERLSM11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLSM11 
Mutations
ICGC Data PortalLSM11 
TCGA Data PortalLSM11 
Broad Tumor PortalLSM11
OASIS PortalLSM11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLSM11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLSM11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LSM11
DgiDB (Drug Gene Interaction Database)LSM11
DoCM (Curated mutations)LSM11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LSM11 (select a term)
intoGenLSM11
Cancer3DLSM11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLSM11
Genetic Testing Registry LSM11
NextProtP83369 [Medical]
TSGene134353
GENETestsLSM11
Target ValidationLSM11
Huge Navigator LSM11 [HugePedia]
snp3D : Map Gene to Disease134353
BioCentury BCIQLSM11
ClinGenLSM11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD134353
Chemical/Pharm GKB GenePA134983181
Clinical trialLSM11
Miscellaneous
canSAR (ICR)LSM11 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLSM11
EVEXLSM11
GoPubMedLSM11
iHOPLSM11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:26:39 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.