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LSM12 (LSM12 homolog)

Identity

Alias_namesLSM12 homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ30656
Other aliasPNAS-135
HGNC (Hugo) LSM12
LocusID (NCBI) 124801
Atlas_Id 68684
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 44034635 and ends at 44067619 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LSM12 (17q21.31) / ATP5S (14q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LSM12   26407
Cards
Entrez_Gene (NCBI)LSM12  124801  LSM12 homolog
AliasesPNAS-135
GeneCards (Weizmann)LSM12
Ensembl hg19 (Hinxton)ENSG00000161654 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161654 [Gene_View]  chr17:44034635-44067619 [Contig_View]  LSM12 [Vega]
ICGC DataPortalENSG00000161654
TCGA cBioPortalLSM12
AceView (NCBI)LSM12
Genatlas (Paris)LSM12
WikiGenes124801
SOURCE (Princeton)LSM12
Genetics Home Reference (NIH)LSM12
Genomic and cartography
GoldenPath hg38 (UCSC)LSM12  -     chr17:44034635-44067619 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LSM12  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblLSM12 - 17q21.31 [CytoView hg19]  LSM12 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBILSM12 [Mapview hg19]  LSM12 [Mapview hg38]
OMIM611793   
Gene and transcription
Genbank (Entrez)AF277193 AK055218 AK300637 AL832076 BC016791
RefSeq transcript (Entrez)NM_152344
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LSM12
Cluster EST : UnigeneHs.355570 [ NCBI ]
CGAP (NCI)Hs.355570
Alternative Splicing GalleryENSG00000161654
Gene ExpressionLSM12 [ NCBI-GEO ]   LSM12 [ EBI - ARRAY_EXPRESS ]   LSM12 [ SEEK ]   LSM12 [ MEM ]
Gene Expression Viewer (FireBrowse)LSM12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124801
GTEX Portal (Tissue expression)LSM12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3MHD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3MHD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3MHD2
Splice isoforms : SwissVarQ3MHD2
PhosPhoSitePlusQ3MHD2
Domains : Interpro (EBI)Anticodon-binding_dom   
Domain families : Pfam (Sanger)AD (PF09793)   
Domain families : Pfam (NCBI)pfam09793   
Domain families : Smart (EMBL)AD (SM00995)  
Conserved Domain (NCBI)LSM12
DMDM Disease mutations124801
Blocks (Seattle)LSM12
SuperfamilyQ3MHD2
Human Protein AtlasENSG00000161654
Peptide AtlasQ3MHD2
HPRD08701
IPIIPI00410324   IPI00867714   IPI00749127   
Protein Interaction databases
DIP (DOE-UCLA)Q3MHD2
IntAct (EBI)Q3MHD2
FunCoupENSG00000161654
BioGRIDLSM12
STRING (EMBL)LSM12
ZODIACLSM12
Ontologies - Pathways
QuickGOQ3MHD2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLSM12
Atlas of Cancer Signalling NetworkLSM12
Wikipedia pathwaysLSM12
Orthology - Evolution
OrthoDB124801
GeneTree (enSembl)ENSG00000161654
Phylogenetic Trees/Animal Genes : TreeFamLSM12
HOVERGENQ3MHD2
HOGENOMQ3MHD2
Homologs : HomoloGeneLSM12
Homology/Alignments : Family Browser (UCSC)LSM12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLSM12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LSM12
dbVarLSM12
ClinVarLSM12
1000_GenomesLSM12 
Exome Variant ServerLSM12
ExAC (Exome Aggregation Consortium)LSM12 (select the gene name)
Genetic variants : HAPMAP124801
Genomic Variants (DGV)LSM12 [DGVbeta]
DECIPHERLSM12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLSM12 
Mutations
ICGC Data PortalLSM12 
TCGA Data PortalLSM12 
Broad Tumor PortalLSM12
OASIS PortalLSM12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLSM12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLSM12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LSM12
DgiDB (Drug Gene Interaction Database)LSM12
DoCM (Curated mutations)LSM12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LSM12 (select a term)
intoGenLSM12
Cancer3DLSM12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611793   
Orphanet
MedgenLSM12
Genetic Testing Registry LSM12
NextProtQ3MHD2 [Medical]
TSGene124801
GENETestsLSM12
Target ValidationLSM12
Huge Navigator LSM12 [HugePedia]
snp3D : Map Gene to Disease124801
BioCentury BCIQLSM12
ClinGenLSM12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124801
Chemical/Pharm GKB GenePA142671502
Clinical trialLSM12
Miscellaneous
canSAR (ICR)LSM12 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLSM12
EVEXLSM12
GoPubMedLSM12
iHOPLSM12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:40 CEST 2017

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