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LSM14B (LSM family member 14B)

Identity

Alias_namesC20orf40
FAM61B
chromosome 20 open reading frame 40
family with sequence similarity 61, member B
LSM14 homolog B (SCD6, S. cerevisiae)
LSM14B, SCD6 homolog B (S. cerevisiae)
Alias_symbol (synonym)FT005
bA11M20.3
FLJ25473
LSM13
RAP55B
Other alias
HGNC (Hugo) LSM14B
LocusID (NCBI) 149986
Atlas_Id 68685
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 62122461 and ends at 62135378 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BTNL9 (5q35.3) / LSM14B (20q13.33)CKB (14q32.32) / LSM14B (20q13.33)LSM14B (20q13.33) / RAP1B (12q15)
TAF4 (20q13.33) / LSM14B (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LSM14B   15887
Cards
Entrez_Gene (NCBI)LSM14B  149986  LSM family member 14B
AliasesC20orf40; FAM61B; FT005; LSM13; 
RAP55B; bA11M20.3
GeneCards (Weizmann)LSM14B
Ensembl hg19 (Hinxton)ENSG00000149657 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149657 [Gene_View]  chr20:62122461-62135378 [Contig_View]  LSM14B [Vega]
ICGC DataPortalENSG00000149657
TCGA cBioPortalLSM14B
AceView (NCBI)LSM14B
Genatlas (Paris)LSM14B
WikiGenes149986
SOURCE (Princeton)LSM14B
Genetics Home Reference (NIH)LSM14B
Genomic and cartography
GoldenPath hg38 (UCSC)LSM14B  -     chr20:62122461-62135378 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LSM14B  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblLSM14B - 20q13.33 [CytoView hg19]  LSM14B - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBILSM14B [Mapview hg19]  LSM14B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF165185 AF172328 AK058202 AK298748 BC035702
RefSeq transcript (Entrez)NM_144703
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LSM14B
Cluster EST : UnigeneHs.105379 [ NCBI ]
CGAP (NCI)Hs.105379
Alternative Splicing GalleryENSG00000149657
Gene ExpressionLSM14B [ NCBI-GEO ]   LSM14B [ EBI - ARRAY_EXPRESS ]   LSM14B [ SEEK ]   LSM14B [ MEM ]
Gene Expression Viewer (FireBrowse)LSM14B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149986
GTEX Portal (Tissue expression)LSM14B
Human Protein AtlasENSG00000149657-LSM14B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BX40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BX40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BX40
Splice isoforms : SwissVarQ9BX40
PhosPhoSitePlusQ9BX40
Domaine pattern : Prosite (Expaxy)DFDF (PS51512)    FFD (PS51513)    TFG (PS51536)   
Domains : Interpro (EBI)DFDF    FDF_dom    FFD_box    Lsm14-like_N    LSM_dom    TFG_box   
Domain families : Pfam (Sanger)FDF (PF09532)    LSM14 (PF12701)   
Domain families : Pfam (NCBI)pfam09532    pfam12701   
Domain families : Smart (EMBL)FDF (SM01199)  LSM14 (SM01271)  
Conserved Domain (NCBI)LSM14B
DMDM Disease mutations149986
Blocks (Seattle)LSM14B
SuperfamilyQ9BX40
Human Protein Atlas [tissue]ENSG00000149657-LSM14B [tissue]
Peptide AtlasQ9BX40
HPRD12768
IPIIPI00032635   IPI00448024   IPI00471933   IPI00514689   IPI01009354   IPI00514164   
Protein Interaction databases
DIP (DOE-UCLA)Q9BX40
IntAct (EBI)Q9BX40
FunCoupENSG00000149657
BioGRIDLSM14B
STRING (EMBL)LSM14B
ZODIACLSM14B
Ontologies - Pathways
QuickGOQ9BX40
Ontology : AmiGORNA binding  regulation of translation  multicellular organism development  intracellular ribonucleoprotein complex  
Ontology : EGO-EBIRNA binding  regulation of translation  multicellular organism development  intracellular ribonucleoprotein complex  
NDEx NetworkLSM14B
Atlas of Cancer Signalling NetworkLSM14B
Wikipedia pathwaysLSM14B
Orthology - Evolution
OrthoDB149986
GeneTree (enSembl)ENSG00000149657
Phylogenetic Trees/Animal Genes : TreeFamLSM14B
HOVERGENQ9BX40
HOGENOMQ9BX40
Homologs : HomoloGeneLSM14B
Homology/Alignments : Family Browser (UCSC)LSM14B
Gene fusions - Rearrangements
Fusion: Tumor Portal LSM14B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLSM14B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LSM14B
dbVarLSM14B
ClinVarLSM14B
1000_GenomesLSM14B 
Exome Variant ServerLSM14B
ExAC (Exome Aggregation Consortium)ENSG00000149657
GNOMAD BrowserENSG00000149657
Genetic variants : HAPMAP149986
Genomic Variants (DGV)LSM14B [DGVbeta]
DECIPHERLSM14B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLSM14B 
Mutations
ICGC Data PortalLSM14B 
TCGA Data PortalLSM14B 
Broad Tumor PortalLSM14B
OASIS PortalLSM14B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLSM14B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLSM14B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LSM14B
DgiDB (Drug Gene Interaction Database)LSM14B
DoCM (Curated mutations)LSM14B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LSM14B (select a term)
intoGenLSM14B
Cancer3DLSM14B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLSM14B
Genetic Testing Registry LSM14B
NextProtQ9BX40 [Medical]
TSGene149986
GENETestsLSM14B
Target ValidationLSM14B
Huge Navigator LSM14B [HugePedia]
snp3D : Map Gene to Disease149986
BioCentury BCIQLSM14B
ClinGenLSM14B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149986
Chemical/Pharm GKB GenePA25754
Clinical trialLSM14B
Miscellaneous
canSAR (ICR)LSM14B (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLSM14B
EVEXLSM14B
GoPubMedLSM14B
iHOPLSM14B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:11:51 CET 2017

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