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LSM14B (LSM family member 14B)

Identity

Alias (NCBI)C20orf40
FAM61B
FT005
LSM13
RAP55B
bA11M20.3
HGNC (Hugo) LSM14B
HGNC Alias symbFT005
bA11M20.3
FLJ25473
LSM13
RAP55B
HGNC Previous nameC20orf40
 FAM61B
HGNC Previous namechromosome 20 open reading frame 40
 family with sequence similarity 61, member B
 LSM14 homolog B (SCD6, S. cerevisiae)
 LSM14B, SCD6 homolog B (S. cerevisiae)
LocusID (NCBI) 149986
Atlas_Id 68685
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 62122475 and ends at 62135372 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BTNL9 (5q35.3) / LSM14B (20q13.33)CKB (14q32.32) / LSM14B (20q13.33)LSM14B (20q13.33) / RAP1B (12q15)
TAF4 (20q13.33) / LSM14B (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)LSM14B   15887
Cards
Entrez_Gene (NCBI)LSM14B    LSM family member 14B
AliasesC20orf40; FAM61B; FT005; LSM13; 
RAP55B; bA11M20.3
GeneCards (Weizmann)LSM14B
Ensembl hg19 (Hinxton)ENSG00000149657 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149657 [Gene_View]  ENSG00000149657 [Sequence]  chr20:62122475-62135372 [Contig_View]  LSM14B [Vega]
ICGC DataPortalENSG00000149657
TCGA cBioPortalLSM14B
AceView (NCBI)LSM14B
Genatlas (Paris)LSM14B
SOURCE (Princeton)LSM14B
Genetics Home Reference (NIH)LSM14B
Genomic and cartography
GoldenPath hg38 (UCSC)LSM14B  -     chr20:62122475-62135372 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LSM14B  -     20q13.33   [Description]    (hg19-Feb_2009)
GoldenPathLSM14B - 20q13.33 [CytoView hg19]  LSM14B - 20q13.33 [CytoView hg38]
ImmunoBaseENSG00000149657
Genome Data Viewer NCBILSM14B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF165185 AF172328 AK058202 AK298748 BC035702
RefSeq transcript (Entrez)NM_144703
Consensus coding sequences : CCDS (NCBI)LSM14B
Gene ExpressionLSM14B [ NCBI-GEO ]   LSM14B [ EBI - ARRAY_EXPRESS ]   LSM14B [ SEEK ]   LSM14B [ MEM ]
Gene Expression Viewer (FireBrowse)LSM14B [ Firebrowse - Broad ]
GenevisibleExpression of LSM14B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149986
GTEX Portal (Tissue expression)LSM14B
Human Protein AtlasENSG00000149657-LSM14B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BX40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BX40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BX40
PhosPhoSitePlusQ9BX40
Domaine pattern : Prosite (Expaxy)DFDF (PS51512)    FFD (PS51513)    TFG (PS51536)   
Domains : Interpro (EBI)DFDF    FDF_dom    FFD_box    Lsm14-like_N    LSM_dom_sf    TFG_box   
Domain families : Pfam (Sanger)FDF (PF09532)    LSM14 (PF12701)   
Domain families : Pfam (NCBI)pfam09532    pfam12701   
Domain families : Smart (EMBL)FDF (SM01199)  LSM14 (SM01271)  
Conserved Domain (NCBI)LSM14B
SuperfamilyQ9BX40
AlphaFold pdb e-kbQ9BX40   
Human Protein Atlas [tissue]ENSG00000149657-LSM14B [tissue]
HPRD12768
Protein Interaction databases
DIP (DOE-UCLA)Q9BX40
IntAct (EBI)Q9BX40
BioGRIDLSM14B
STRING (EMBL)LSM14B
ZODIACLSM14B
Ontologies - Pathways
QuickGOQ9BX40
Ontology : AmiGORNA binding  mRNA binding  protein binding  regulation of translation  multicellular organism development  
Ontology : EGO-EBIRNA binding  mRNA binding  protein binding  regulation of translation  multicellular organism development  
NDEx NetworkLSM14B
Atlas of Cancer Signalling NetworkLSM14B
Wikipedia pathwaysLSM14B
Orthology - Evolution
OrthoDB149986
GeneTree (enSembl)ENSG00000149657
Phylogenetic Trees/Animal Genes : TreeFamLSM14B
Homologs : HomoloGeneLSM14B
Homology/Alignments : Family Browser (UCSC)LSM14B
Gene fusions - Rearrangements
Fusion : QuiverLSM14B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLSM14B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LSM14B
dbVarLSM14B
ClinVarLSM14B
MonarchLSM14B
1000_GenomesLSM14B 
Exome Variant ServerLSM14B
GNOMAD BrowserENSG00000149657
Varsome BrowserLSM14B
ACMGLSM14B variants
VarityQ9BX40
Genomic Variants (DGV)LSM14B [DGVbeta]
DECIPHERLSM14B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLSM14B 
Mutations
ICGC Data PortalLSM14B 
TCGA Data PortalLSM14B 
Broad Tumor PortalLSM14B
OASIS PortalLSM14B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLSM14B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLSM14B
Mutations and Diseases : HGMDLSM14B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaLSM14B
DgiDB (Drug Gene Interaction Database)LSM14B
DoCM (Curated mutations)LSM14B
CIViC (Clinical Interpretations of Variants in Cancer)LSM14B
Cancer3DLSM14B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLSM14B
MedgenLSM14B
Genetic Testing Registry LSM14B
NextProtQ9BX40 [Medical]
GENETestsLSM14B
Target ValidationLSM14B
Huge Navigator LSM14B [HugePedia]
ClinGenLSM14B
Clinical trials, drugs, therapy
MyCancerGenomeLSM14B
Protein Interactions : CTDLSM14B
Pharm GKB GenePA25754
PharosQ9BX40
Clinical trialLSM14B
Miscellaneous
canSAR (ICR)LSM14B
HarmonizomeLSM14B
DataMed IndexLSM14B
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLSM14B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:06:30 CEST 2021

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