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LSM4 (LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae))

Identity

Other namesGRP
YER112W
HGNC (Hugo) LSM4
LocusID (NCBI) 25804
Location 19p13.11
Location_base_pair Starts at 18417040 and ends at 18434001 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LSM4   17259
Entrez_Gene (NCBI)LSM4  25804  LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Cards
GeneCards (Weizmann)LSM4
Ensembl (Hinxton)ENSG00000130520 [Gene_View]  chr19:18417040-18434001 [Contig_View]  LSM4 [Vega]
AceView (NCBI)LSM4
Genatlas (Paris)LSM4
SOURCE (Stanford)NM_001252129 NM_012321
Genomic and cartography
GoldenPath (UCSC)LSM4  -  19p13.11   chr19:18417040-18434001 -  19p13.11   [Description]    (hg19-Feb_2009)
EnsemblLSM4 - 19p13.11 [CytoView]
Mapping of homologs : NCBILSM4 [Mapview]
OMIM607284   
Gene and transcription
Genbank (Entrez)AA722246 AF117235 AF182290 AF251218 AJ238096
RefSeq transcript (SRS)NM_001252129 NM_012321
RefSeq transcript (Entrez)NM_001252129 NM_012321
RefSeq genomic (SRS)AC_000151 NC_000019 NC_018930 NT_011295 NW_001838484 NW_004078098
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011295 NW_001838484 NW_004078098
Consensus coding sequences : CCDS (NCBI)LSM4
Cluster EST : UnigeneHs.515255 [ SRS ] Hs.515255 [ NCBI ]
CGAP (NCI)Hs.515255
Alternative Splicing : Fast-db (Paris)GSHG0015626
Alternative Splicing GalleryENSG00000130520
Gene ExpressionLSM4 [ NCBI-GEO ]   LSM4 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4Z0 (SRS) Q9Y4Z0 (Uniprot)
NextProtQ9Y4Z0
With graphics : InterProQ9Y4Z0
Splice isoforms : SwissVarQ9Y4Z0(Swissvar)
Domains : Interpro (SRS)LSM_dom    Ribonucl_LSM    Ribonucl_LSM_euk/arc   
Domains : Interpro (EBI)LSM_dom    Ribonucl_LSM    Ribonucl_LSM_euk/arc   
Related proteins : CluSTrQ9Y4Z0
Domain families : Pfam (SRS)LSM (PF01423)   
Domain families : Pfam (Sanger)LSM (PF01423)   
Domain families : Pfam (NCBI)pfam01423   
Domain families : Smart (EMBL)Sm (SM00651)  
DMDM25804
Blocks (Seattle)Q9Y4Z0
Human Protein AtlasENSG00000130520
HPRD06284
IPIIPI00294955   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4Z0
IntAct (EBI)Q9Y4Z0
FunCoupENSG00000130520
REACTOMELSM4
Protein Interaction Database25804
BioGRIDLSM4
InParanoidQ9Y4Z0
Interologous Interaction database Q9Y4Z0
IntegromeDBLSM4
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)LSM4
SNP (GeneSNP Utah)LSM4
SNP : HGBaseLSM4
Genetic variants : HAPMAPLSM4
Somatic Mutations in Cancer : COSMICLSM4 
CONAN: Copy Number AnalysisLSM4 
Mutations and Diseases : HGMDLSM4
OMIM607284   
GENETests607284   
Disease Genetic AssociationLSM4
Huge Navigator LSM4 [HugePedia]  LSM4 [HugeCancerGEM]
Genomic VariantsLSM4  LSM4 [DGVbeta]
snp3D : Map Gene to Disease25804
General knowledge
Homologs : HomoloGeneLSM4
Homology/Alignments : Family Browser (UCSC)LSM4
Phylogenetic Trees/Animal Genes : TreeFamLSM4
Chemical/Protein Interactions : CTD25804
Chemical/Pharm GKB GenePA134906569
Clinical trialLSM4
Cancer Resource (Charite)ENSG00000130520
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  RNA binding  protein binding  U6 snRNP  cytosol  mRNA processing  RNA splicing  gene expression  RNA metabolic process  mRNA metabolic process  small nuclear ribonucleoprotein complex  exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  RNA binding  protein binding  U6 snRNP  cytosol  mRNA processing  RNA splicing  gene expression  RNA metabolic process  mRNA metabolic process  small nuclear ribonucleoprotein complex  exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay  
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
PubGeneLSM4
iHOPLSM4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:25:41 CEST 2013
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