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LSM7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated)

Identity

Alias_namesLSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Alias_symbol (synonym)YNL147W
Other alias
HGNC (Hugo) LSM7
LocusID (NCBI) 51690
Atlas_Id 68690
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 2321521 and ends at 2328615 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LSM7   20470
Cards
Entrez_Gene (NCBI)LSM7  51690  LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
AliasesYNL147W
GeneCards (Weizmann)LSM7
Ensembl hg19 (Hinxton)ENSG00000130332 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130332 [Gene_View]  chr19:2321521-2328615 [Contig_View]  LSM7 [Vega]
ICGC DataPortalENSG00000130332
TCGA cBioPortalLSM7
AceView (NCBI)LSM7
Genatlas (Paris)LSM7
WikiGenes51690
SOURCE (Princeton)LSM7
Genetics Home Reference (NIH)LSM7
Genomic and cartography
GoldenPath hg38 (UCSC)LSM7  -     chr19:2321521-2328615 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LSM7  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblLSM7 - 19p13.3 [CytoView hg19]  LSM7 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBILSM7 [Mapview hg19]  LSM7 [Mapview hg38]
OMIM607287   
Gene and transcription
Genbank (Entrez)AF182293 BC018621 BI553911 DQ895160 DQ895401
RefSeq transcript (Entrez)NM_016199
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LSM7
Cluster EST : UnigeneHs.512610 [ NCBI ]
CGAP (NCI)Hs.512610
Alternative Splicing GalleryENSG00000130332
Gene ExpressionLSM7 [ NCBI-GEO ]   LSM7 [ EBI - ARRAY_EXPRESS ]   LSM7 [ SEEK ]   LSM7 [ MEM ]
Gene Expression Viewer (FireBrowse)LSM7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51690
GTEX Portal (Tissue expression)LSM7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK45   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK45  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK45
Splice isoforms : SwissVarQ9UK45
PhosPhoSitePlusQ9UK45
Domains : Interpro (EBI)Lsm7    LSM_dom    LSM_dom_euk/arc   
Domain families : Pfam (Sanger)LSM (PF01423)   
Domain families : Pfam (NCBI)pfam01423   
Domain families : Smart (EMBL)Sm (SM00651)  
Conserved Domain (NCBI)LSM7
DMDM Disease mutations51690
Blocks (Seattle)LSM7
PDB (SRS)3JCR   
PDB (PDBSum)3JCR   
PDB (IMB)3JCR   
PDB (RSDB)3JCR   
Structural Biology KnowledgeBase3JCR   
SCOP (Structural Classification of Proteins)3JCR   
CATH (Classification of proteins structures)3JCR   
SuperfamilyQ9UK45
Human Protein AtlasENSG00000130332
Peptide AtlasQ9UK45
HPRD06287
IPIIPI00007163   IPI00942405   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK45
IntAct (EBI)Q9UK45
FunCoupENSG00000130332
BioGRIDLSM7
STRING (EMBL)LSM7
ZODIACLSM7
Ontologies - Pathways
QuickGOQ9UK45
Ontology : AmiGOmRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  U6 snRNP  U12-type spliceosomal complex  cytosol  RNA processing  U6 snRNA binding  exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay  U2-type prespliceosome  catalytic step 2 spliceosome  spliceosomal tri-snRNP complex  Lsm1-7-Pat1 complex  
Ontology : EGO-EBImRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  U6 snRNP  U12-type spliceosomal complex  cytosol  RNA processing  U6 snRNA binding  exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay  U2-type prespliceosome  catalytic step 2 spliceosome  spliceosomal tri-snRNP complex  Lsm1-7-Pat1 complex  
Pathways : KEGGRNA degradation    Spliceosome   
NDEx NetworkLSM7
Atlas of Cancer Signalling NetworkLSM7
Wikipedia pathwaysLSM7
Orthology - Evolution
OrthoDB51690
GeneTree (enSembl)ENSG00000130332
Phylogenetic Trees/Animal Genes : TreeFamLSM7
HOVERGENQ9UK45
HOGENOMQ9UK45
Homologs : HomoloGeneLSM7
Homology/Alignments : Family Browser (UCSC)LSM7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLSM7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LSM7
dbVarLSM7
ClinVarLSM7
1000_GenomesLSM7 
Exome Variant ServerLSM7
ExAC (Exome Aggregation Consortium)LSM7 (select the gene name)
Genetic variants : HAPMAP51690
Genomic Variants (DGV)LSM7 [DGVbeta]
DECIPHERLSM7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLSM7 
Mutations
ICGC Data PortalLSM7 
TCGA Data PortalLSM7 
Broad Tumor PortalLSM7
OASIS PortalLSM7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLSM7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLSM7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LSM7
DgiDB (Drug Gene Interaction Database)LSM7
DoCM (Curated mutations)LSM7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LSM7 (select a term)
intoGenLSM7
Cancer3DLSM7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607287   
Orphanet
MedgenLSM7
Genetic Testing Registry LSM7
NextProtQ9UK45 [Medical]
TSGene51690
GENETestsLSM7
Target ValidationLSM7
Huge Navigator LSM7 [HugePedia]
snp3D : Map Gene to Disease51690
BioCentury BCIQLSM7
ClinGenLSM7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51690
Chemical/Pharm GKB GenePA134888612
Clinical trialLSM7
Miscellaneous
canSAR (ICR)LSM7 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLSM7
EVEXLSM7
GoPubMedLSM7
iHOPLSM7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:25:09 CEST 2017

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