LSM8 (LSM8 homolog, U6 small nuclear RNA associated)

2014-11-01  

Identity

HGNC
LOCATION
7q31.31
LOCUSID
ALIAS
NAA38

Other Information

Locus ID:

NCBI: 51691
MIM: 607288
HGNC: 20471
Ensembl: ENSG00000128534

Variants:

dbSNP: 51691
ClinVar: 51691
TCGA: ENSG00000128534
COSMIC: LSM8

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000128534ENST00000249299O95777
ENSG00000128534ENST00000249299A4D0W0
ENSG00000128534ENST00000411938C9JNV3
ENSG00000128534ENST00000422760C9JIZ0
ENSG00000128534ENST00000424702F2Z2Y6

Expression (GTEx)

0
5
10
15
20
25

Pathways

PathwaySourceExternal ID
RNA degradationKEGGko03018
RNA degradationKEGGhsa03018
SpliceosomeKEGGko03040
SpliceosomeKEGGhsa03040
Spliceosome, U4/U6.U5 tri-snRNPKEGGhsa_M00354
Lsm 2-8 complexKEGGhsa_M00396
Spliceosome, U4/U6.U5 tri-snRNPKEGGM00354
Lsm 2-8 complexKEGGM00396
Gene ExpressionREACTOMER-HSA-74160
Processing of Capped Intron-Containing Pre-mRNAREACTOMER-HSA-72203
mRNA SplicingREACTOMER-HSA-72172
mRNA Splicing - Major PathwayREACTOMER-HSA-72163

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
228759872012Nuclear LSm8 affects number of cytoplasmic processing bodies via controlling cellular distribution of Like-Sm proteins.6

Citation

Dessen P

LSM8 (LSM8 homolog, U6 small nuclear RNA associated)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/68691/lsm8