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LSM8 (LSM8 homolog, U6 small nuclear RNA associated)

Identity

Alias_namesthis gene was incorrectly assigned as NAA38, 'N(alpha)-acetyltransferase 38, NatC auxiliary subunit', see HGNC:28212 for the real NAA38
LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Alias_symbol (synonym)YJR022W
Other aliasNAA38
HGNC (Hugo) LSM8
LocusID (NCBI) 51691
Atlas_Id 68691
Location 7q31.31  [Link to chromosome band 7q31]
Location_base_pair Starts at 118184032 and ends at 118204039 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LSM8   20471
Cards
Entrez_Gene (NCBI)LSM8  51691  LSM8 homolog, U6 small nuclear RNA associated
AliasesNAA38
GeneCards (Weizmann)LSM8
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:118184032-118204039 [Contig_View]  LSM8 [Vega]
TCGA cBioPortalLSM8
AceView (NCBI)LSM8
Genatlas (Paris)LSM8
WikiGenes51691
SOURCE (Princeton)LSM8
Genetics Home Reference (NIH)LSM8
Genomic and cartography
GoldenPath hg38 (UCSC)LSM8  -     chr7:118184032-118204039 +  7q31.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LSM8  -     7q31.31   [Description]    (hg19-Feb_2009)
EnsemblLSM8 - 7q31.31 [CytoView hg19]  LSM8 - 7q31.31 [CytoView hg38]
Mapping of homologs : NCBILSM8 [Mapview hg19]  LSM8 [Mapview hg38]
OMIM607288   
Gene and transcription
Genbank (Entrez)AF182294 AK090561 AK311936 AL600056 BC002742
RefSeq transcript (Entrez)NM_016200
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LSM8
Cluster EST : UnigeneHs.655046 [ NCBI ]
CGAP (NCI)Hs.655046
Gene ExpressionLSM8 [ NCBI-GEO ]   LSM8 [ EBI - ARRAY_EXPRESS ]   LSM8 [ SEEK ]   LSM8 [ MEM ]
Gene Expression Viewer (FireBrowse)LSM8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51691
GTEX Portal (Tissue expression)LSM8
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95777   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95777  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95777
Splice isoforms : SwissVarO95777
PhosPhoSitePlusO95777
Domains : Interpro (EBI)Lsm8    LSM_dom    LSM_dom_euk/arc   
Domain families : Pfam (Sanger)LSM (PF01423)   
Domain families : Pfam (NCBI)pfam01423   
Domain families : Smart (EMBL)Sm (SM00651)  
Conserved Domain (NCBI)LSM8
DMDM Disease mutations51691
Blocks (Seattle)LSM8
PDB (SRS)3JCR   
PDB (PDBSum)3JCR   
PDB (IMB)3JCR   
PDB (RSDB)3JCR   
Structural Biology KnowledgeBase3JCR   
SCOP (Structural Classification of Proteins)3JCR   
CATH (Classification of proteins structures)3JCR   
SuperfamilyO95777
Peptide AtlasO95777
HPRD06288
IPIIPI00219871   IPI00924875   IPI00924695   IPI00924467   
Protein Interaction databases
DIP (DOE-UCLA)O95777
IntAct (EBI)O95777
BioGRIDLSM8
STRING (EMBL)LSM8
ZODIACLSM8
Ontologies - Pathways
QuickGOO95777
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  RNA binding  protein binding  nucleoplasm  spliceosomal complex  U6 snRNP  U6 snRNA binding  U4/U6 x U5 tri-snRNP complex  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  RNA binding  protein binding  nucleoplasm  spliceosomal complex  U6 snRNP  U6 snRNA binding  U4/U6 x U5 tri-snRNP complex  
NDEx NetworkLSM8
Atlas of Cancer Signalling NetworkLSM8
Wikipedia pathwaysLSM8
Orthology - Evolution
OrthoDB51691
Phylogenetic Trees/Animal Genes : TreeFamLSM8
HOVERGENO95777
HOGENOMO95777
Homologs : HomoloGeneLSM8
Homology/Alignments : Family Browser (UCSC)LSM8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLSM8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LSM8
dbVarLSM8
ClinVarLSM8
1000_GenomesLSM8 
Exome Variant ServerLSM8
ExAC (Exome Aggregation Consortium)LSM8 (select the gene name)
Genetic variants : HAPMAP51691
Genomic Variants (DGV)LSM8 [DGVbeta]
DECIPHERLSM8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLSM8 
Mutations
ICGC Data PortalLSM8 
TCGA Data PortalLSM8 
Broad Tumor PortalLSM8
OASIS PortalLSM8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLSM8
BioMutasearch LSM8
DgiDB (Drug Gene Interaction Database)LSM8
DoCM (Curated mutations)LSM8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LSM8 (select a term)
intoGenLSM8
Cancer3DLSM8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607288   
Orphanet
MedgenLSM8
Genetic Testing Registry LSM8
NextProtO95777 [Medical]
TSGene51691
GENETestsLSM8
Target ValidationLSM8
Huge Navigator LSM8 [HugePedia]
snp3D : Map Gene to Disease51691
BioCentury BCIQLSM8
ClinGenLSM8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51691
Chemical/Pharm GKB GenePA165618166
Clinical trialLSM8
Miscellaneous
canSAR (ICR)LSM8 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLSM8
EVEXLSM8
GoPubMedLSM8
iHOPLSM8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:40 CEST 2017

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