Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LSMEM1 (leucine rich single-pass membrane protein 1)

Identity

Alias_namesC7orf53
chromosome 7 open reading frame 53
leucine-rich single-pass membrane protein 1
Alias_symbol (synonym)FLJ39575
Other alias
HGNC (Hugo) LSMEM1
LocusID (NCBI) 286006
Atlas_Id 68692
Location 7q31.1  [Link to chromosome band 7q31]
Location_base_pair Starts at 112480853 and ends at 112490888 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LSMEM1   22036
Cards
Entrez_Gene (NCBI)LSMEM1  286006  leucine rich single-pass membrane protein 1
AliasesC7orf53
GeneCards (Weizmann)LSMEM1
Ensembl hg19 (Hinxton)ENSG00000181016 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181016 [Gene_View]  chr7:112480853-112490888 [Contig_View]  LSMEM1 [Vega]
ICGC DataPortalENSG00000181016
TCGA cBioPortalLSMEM1
AceView (NCBI)LSMEM1
Genatlas (Paris)LSMEM1
WikiGenes286006
SOURCE (Princeton)LSMEM1
Genetics Home Reference (NIH)LSMEM1
Genomic and cartography
GoldenPath hg38 (UCSC)LSMEM1  -     chr7:112480853-112490888 +  7q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LSMEM1  -     7q31.1   [Description]    (hg19-Feb_2009)
EnsemblLSMEM1 - 7q31.1 [CytoView hg19]  LSMEM1 - 7q31.1 [CytoView hg38]
Mapping of homologs : NCBILSMEM1 [Mapview hg19]  LSMEM1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA121517 AK096894 BC031976 BC126149 BC130568
RefSeq transcript (Entrez)NM_001134468 NM_182597
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LSMEM1
Cluster EST : UnigeneHs.396189 [ NCBI ]
CGAP (NCI)Hs.396189
Alternative Splicing GalleryENSG00000181016
Gene ExpressionLSMEM1 [ NCBI-GEO ]   LSMEM1 [ EBI - ARRAY_EXPRESS ]   LSMEM1 [ SEEK ]   LSMEM1 [ MEM ]
Gene Expression Viewer (FireBrowse)LSMEM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286006
GTEX Portal (Tissue expression)LSMEM1
Human Protein AtlasENSG00000181016-LSMEM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8F7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8F7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8F7
Splice isoforms : SwissVarQ8N8F7
PhosPhoSitePlusQ8N8F7
Domains : Interpro (EBI)DUF4577   
Domain families : Pfam (Sanger)DUF4577 (PF15145)   
Domain families : Pfam (NCBI)pfam15145   
Conserved Domain (NCBI)LSMEM1
DMDM Disease mutations286006
Blocks (Seattle)LSMEM1
SuperfamilyQ8N8F7
Human Protein Atlas [tissue]ENSG00000181016-LSMEM1 [tissue]
Peptide AtlasQ8N8F7
HPRD08258
IPIIPI00167464   IPI00871161   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8F7
IntAct (EBI)Q8N8F7
FunCoupENSG00000181016
BioGRIDLSMEM1
STRING (EMBL)LSMEM1
ZODIACLSMEM1
Ontologies - Pathways
QuickGOQ8N8F7
Ontology : AmiGOprotein binding  cytosol  integral component of membrane  
Ontology : EGO-EBIprotein binding  cytosol  integral component of membrane  
NDEx NetworkLSMEM1
Atlas of Cancer Signalling NetworkLSMEM1
Wikipedia pathwaysLSMEM1
Orthology - Evolution
OrthoDB286006
GeneTree (enSembl)ENSG00000181016
Phylogenetic Trees/Animal Genes : TreeFamLSMEM1
HOVERGENQ8N8F7
HOGENOMQ8N8F7
Homologs : HomoloGeneLSMEM1
Homology/Alignments : Family Browser (UCSC)LSMEM1
Gene fusions - Rearrangements
Fusion: Tumor Portal LSMEM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLSMEM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LSMEM1
dbVarLSMEM1
ClinVarLSMEM1
1000_GenomesLSMEM1 
Exome Variant ServerLSMEM1
ExAC (Exome Aggregation Consortium)ENSG00000181016
GNOMAD BrowserENSG00000181016
Genetic variants : HAPMAP286006
Genomic Variants (DGV)LSMEM1 [DGVbeta]
DECIPHERLSMEM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLSMEM1 
Mutations
ICGC Data PortalLSMEM1 
TCGA Data PortalLSMEM1 
Broad Tumor PortalLSMEM1
OASIS PortalLSMEM1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLSMEM1
BioMutasearch LSMEM1
DgiDB (Drug Gene Interaction Database)LSMEM1
DoCM (Curated mutations)LSMEM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LSMEM1 (select a term)
intoGenLSMEM1
Cancer3DLSMEM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLSMEM1
Genetic Testing Registry LSMEM1
NextProtQ8N8F7 [Medical]
TSGene286006
GENETestsLSMEM1
Target ValidationLSMEM1
Huge Navigator LSMEM1 [HugePedia]
snp3D : Map Gene to Disease286006
BioCentury BCIQLSMEM1
ClinGenLSMEM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286006
Chemical/Pharm GKB GenePA162380593
Clinical trialLSMEM1
Miscellaneous
canSAR (ICR)LSMEM1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLSMEM1
EVEXLSMEM1
GoPubMedLSMEM1
iHOPLSMEM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:11:52 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.