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LSMEM2 (leucine rich single-pass membrane protein 2)

Identity

Alias_namesC3orf45
chromosome 3 open reading frame 45
leucine-rich single-pass membrane protein 2
Alias_symbol (synonym)FLJ38608
Other alias
HGNC (Hugo) LSMEM2
LocusID (NCBI) 132228
Atlas_Id 68693
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 50279027 and ends at 50288114 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LSMEM2   26781
Cards
Entrez_Gene (NCBI)LSMEM2  132228  leucine rich single-pass membrane protein 2
AliasesC3orf45
GeneCards (Weizmann)LSMEM2
Ensembl hg19 (Hinxton)ENSG00000179564 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179564 [Gene_View]  chr3:50279027-50288114 [Contig_View]  LSMEM2 [Vega]
ICGC DataPortalENSG00000179564
TCGA cBioPortalLSMEM2
AceView (NCBI)LSMEM2
Genatlas (Paris)LSMEM2
WikiGenes132228
SOURCE (Princeton)LSMEM2
Genetics Home Reference (NIH)LSMEM2
Genomic and cartography
GoldenPath hg38 (UCSC)LSMEM2  -     chr3:50279027-50288114 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LSMEM2  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblLSMEM2 - 3p21.31 [CytoView hg19]  LSMEM2 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBILSMEM2 [Mapview hg19]  LSMEM2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095927 BC028000 DA830939 EU832119 EU832213
RefSeq transcript (Entrez)NM_001304385 NM_153215
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LSMEM2
Cluster EST : UnigeneHs.315177 [ NCBI ]
CGAP (NCI)Hs.315177
Alternative Splicing GalleryENSG00000179564
Gene ExpressionLSMEM2 [ NCBI-GEO ]   LSMEM2 [ EBI - ARRAY_EXPRESS ]   LSMEM2 [ SEEK ]   LSMEM2 [ MEM ]
Gene Expression Viewer (FireBrowse)LSMEM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132228
GTEX Portal (Tissue expression)LSMEM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N112   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N112  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N112
Splice isoforms : SwissVarQ8N112
PhosPhoSitePlusQ8N112
Domains : Interpro (EBI)DUF4714   
Domain families : Pfam (Sanger)DUF4714 (PF15833)   
Domain families : Pfam (NCBI)pfam15833   
Conserved Domain (NCBI)LSMEM2
DMDM Disease mutations132228
Blocks (Seattle)LSMEM2
SuperfamilyQ8N112
Human Protein AtlasENSG00000179564
Peptide AtlasQ8N112
HPRD08789
IPIIPI00166038   
Protein Interaction databases
DIP (DOE-UCLA)Q8N112
IntAct (EBI)Q8N112
FunCoupENSG00000179564
BioGRIDLSMEM2
STRING (EMBL)LSMEM2
ZODIACLSMEM2
Ontologies - Pathways
QuickGOQ8N112
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkLSMEM2
Atlas of Cancer Signalling NetworkLSMEM2
Wikipedia pathwaysLSMEM2
Orthology - Evolution
OrthoDB132228
GeneTree (enSembl)ENSG00000179564
Phylogenetic Trees/Animal Genes : TreeFamLSMEM2
HOVERGENQ8N112
HOGENOMQ8N112
Homologs : HomoloGeneLSMEM2
Homology/Alignments : Family Browser (UCSC)LSMEM2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLSMEM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LSMEM2
dbVarLSMEM2
ClinVarLSMEM2
1000_GenomesLSMEM2 
Exome Variant ServerLSMEM2
ExAC (Exome Aggregation Consortium)LSMEM2 (select the gene name)
Genetic variants : HAPMAP132228
Genomic Variants (DGV)LSMEM2 [DGVbeta]
DECIPHERLSMEM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLSMEM2 
Mutations
ICGC Data PortalLSMEM2 
TCGA Data PortalLSMEM2 
Broad Tumor PortalLSMEM2
OASIS PortalLSMEM2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLSMEM2
BioMutasearch LSMEM2
DgiDB (Drug Gene Interaction Database)LSMEM2
DoCM (Curated mutations)LSMEM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LSMEM2 (select a term)
intoGenLSMEM2
Cancer3DLSMEM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLSMEM2
Genetic Testing Registry LSMEM2
NextProtQ8N112 [Medical]
TSGene132228
GENETestsLSMEM2
Target ValidationLSMEM2
Huge Navigator LSMEM2 [HugePedia]
snp3D : Map Gene to Disease132228
BioCentury BCIQLSMEM2
ClinGenLSMEM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD132228
Chemical/Pharm GKB GenePA143485322
Clinical trialLSMEM2
Miscellaneous
canSAR (ICR)LSMEM2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLSMEM2
EVEXLSMEM2
GoPubMedLSMEM2
iHOPLSMEM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:41 CEST 2017

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