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LSR (lipolysis stimulated lipoprotein receptor)

Identity

Alias_symbol (synonym)LISCH7
ILDR3
Other alias
HGNC (Hugo) LSR
LocusID (NCBI) 51599
Atlas_Id 50010
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 35248656 and ends at 35267964 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LSR (19q13.12) / SCN1B (19q13.12)MUC2 (11p15.5) / LSR (19q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LSR   29572
Cards
Entrez_Gene (NCBI)LSR  51599  lipolysis stimulated lipoprotein receptor
AliasesILDR3; LISCH7
GeneCards (Weizmann)LSR
Ensembl hg19 (Hinxton)ENSG00000105699 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105699 [Gene_View]  chr19:35248656-35267964 [Contig_View]  LSR [Vega]
ICGC DataPortalENSG00000105699
TCGA cBioPortalLSR
AceView (NCBI)LSR
Genatlas (Paris)LSR
WikiGenes51599
SOURCE (Princeton)LSR
Genetics Home Reference (NIH)LSR
Genomic and cartography
GoldenPath hg38 (UCSC)LSR  -     chr19:35248656-35267964 +  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LSR  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblLSR - 19q13.12 [CytoView hg19]  LSR - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBILSR [Mapview hg19]  LSR [Mapview hg38]
OMIM616582   
Gene and transcription
Genbank (Entrez)AF130366 AK075426 AK126834 AK130367 AK296618
RefSeq transcript (Entrez)NM_001260489 NM_001260490 NM_015925 NM_205834 NM_205835
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LSR
Cluster EST : UnigeneHs.466507 [ NCBI ]
CGAP (NCI)Hs.466507
Alternative Splicing GalleryENSG00000105699
Gene ExpressionLSR [ NCBI-GEO ]   LSR [ EBI - ARRAY_EXPRESS ]   LSR [ SEEK ]   LSR [ MEM ]
Gene Expression Viewer (FireBrowse)LSR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51599
GTEX Portal (Tissue expression)LSR
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86X29   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86X29  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86X29
Splice isoforms : SwissVarQ86X29
PhosPhoSitePlusQ86X29
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    LISCH7   
Domain families : Pfam (Sanger)LSR (PF05624)   
Domain families : Pfam (NCBI)pfam05624   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)LSR
DMDM Disease mutations51599
Blocks (Seattle)LSR
SuperfamilyQ86X29
Human Protein AtlasENSG00000105699
Peptide AtlasQ86X29
HPRD17283
IPIIPI00409640   IPI00328218   IPI00908558   IPI00641640   IPI00409641   
Protein Interaction databases
DIP (DOE-UCLA)Q86X29
IntAct (EBI)Q86X29
FunCoupENSG00000105699
BioGRIDLSR
STRING (EMBL)LSR
ZODIACLSR
Ontologies - Pathways
QuickGOQ86X29
Ontology : AmiGOliver development  plasma membrane  plasma membrane  receptor-mediated endocytosis  integral component of membrane  regulation of lipid metabolic process  very-low-density lipoprotein particle  low-density lipoprotein particle  lipoprotein metabolic process  chylomicron  establishment of blood-brain barrier  tricellular tight junction  protein localization to tricellular tight junction  extracellular exosome  tricellular tight junction assembly  
Ontology : EGO-EBIliver development  plasma membrane  plasma membrane  receptor-mediated endocytosis  integral component of membrane  regulation of lipid metabolic process  very-low-density lipoprotein particle  low-density lipoprotein particle  lipoprotein metabolic process  chylomicron  establishment of blood-brain barrier  tricellular tight junction  protein localization to tricellular tight junction  extracellular exosome  tricellular tight junction assembly  
NDEx NetworkLSR
Atlas of Cancer Signalling NetworkLSR
Wikipedia pathwaysLSR
Orthology - Evolution
OrthoDB51599
GeneTree (enSembl)ENSG00000105699
Phylogenetic Trees/Animal Genes : TreeFamLSR
HOVERGENQ86X29
HOGENOMQ86X29
Homologs : HomoloGeneLSR
Homology/Alignments : Family Browser (UCSC)LSR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLSR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LSR
dbVarLSR
ClinVarLSR
1000_GenomesLSR 
Exome Variant ServerLSR
ExAC (Exome Aggregation Consortium)LSR (select the gene name)
Genetic variants : HAPMAP51599
Genomic Variants (DGV)LSR [DGVbeta]
DECIPHERLSR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLSR 
Mutations
ICGC Data PortalLSR 
TCGA Data PortalLSR 
Broad Tumor PortalLSR
OASIS PortalLSR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLSR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLSR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LSR
DgiDB (Drug Gene Interaction Database)LSR
DoCM (Curated mutations)LSR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LSR (select a term)
intoGenLSR
Cancer3DLSR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616582   
Orphanet
MedgenLSR
Genetic Testing Registry LSR
NextProtQ86X29 [Medical]
TSGene51599
GENETestsLSR
Target ValidationLSR
Huge Navigator LSR [HugePedia]
snp3D : Map Gene to Disease51599
BioCentury BCIQLSR
ClinGenLSR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51599
Chemical/Pharm GKB GenePA142671504
Clinical trialLSR
Miscellaneous
canSAR (ICR)LSR (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLSR
EVEXLSR
GoPubMedLSR
iHOPLSR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:16:36 CEST 2017

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