Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LTB4R2 (leukotriene B4 receptor 2)

Identity

Other namesBLT2
BLTR2
JULF2
KPG_004
LTB4-R 2
LTB4-R2
NOP9
HGNC (Hugo) LTB4R2
LocusID (NCBI) 56413
Location 14q12
Location_base_pair Starts at 24779357 and ends at 24781259 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LTB4R2   19260
Entrez_Gene (NCBI)LTB4R2  56413  leukotriene B4 receptor 2
Cards
GeneCards (Weizmann)LTB4R2
Ensembl (Hinxton)ENSG00000213906 [Gene_View]  chr14:24779357-24781259 [Contig_View]  LTB4R2 [Vega]
AceView (NCBI)LTB4R2
Genatlas (Paris)LTB4R2
SOURCE (Stanford)NM_001164692 NM_001164693 NM_019839
Genomic and cartography
GoldenPath (UCSC)LTB4R2  -  14q12   chr14:24779357-24781259 +  14q12   [Description]    (hg19-Feb_2009)
EnsemblLTB4R2 - 14q12 [CytoView]
Mapping of homologs : NCBILTB4R2 [Mapview]
OMIM605773   
Gene and transcription
Genbank (Entrez)AB029892 AB032558 AB044402 AF277230 AF308571
RefSeq transcript (SRS)NM_001164692 NM_001164693 NM_019839
RefSeq transcript (Entrez)NM_001164692 NM_001164693 NM_019839
RefSeq genomic (SRS)AC_000146 NC_000014 NC_018925 NT_026437 NW_001838110 NW_004078079
RefSeq genomic (Entrez)AC_000146 NC_000014 NC_018925 NT_026437 NW_001838110 NW_004078079
Consensus coding sequences : CCDS (NCBI)LTB4R2
Cluster EST : UnigeneHs.657595 [ SRS ] Hs.657595 [ NCBI ]
CGAP (NCI)Hs.657595
Alternative Splicing : Fast-db (Paris)GSHG0033218
Alternative Splicing GalleryENSG00000213906
Gene ExpressionLTB4R2 [ NCBI-GEO ]   LTB4R2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPC1 (SRS) Q9NPC1 (Uniprot)
NextProtQ9NPC1
With graphics : InterProQ9NPC1
Splice isoforms : SwissVarQ9NPC1(Swissvar)
Domaine pattern : Prosite (SRS)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (SRS)7TM_GPCR_Rhodpsn    GPCR_Rhodpsn_supfam    Leukotriene_B4_rcpt    Leukotriene_B4_typ-2_rcpt   
Domains : Interpro (EBI)7TM_GPCR_Rhodpsn    GPCR_Rhodpsn_supfam    Leukotriene_B4_rcpt    Leukotriene_B4_typ-2_rcpt   
Related proteins : CluSTrQ9NPC1
Domain families : Pfam (SRS)7tm_1 (PF00001)   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM56413
Blocks (Seattle)Q9NPC1
Human Protein AtlasENSG00000213906
HPRD16153
IPIIPI00022867   IPI00982088   IPI00980914   IPI00983927   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPC1
IntAct (EBI)Q9NPC1
FunCoupENSG00000213906
REACTOMELTB4R2
Protein Interaction Database56413
BioGRIDLTB4R2
InParanoidQ9NPC1
Interologous Interaction database Q9NPC1
IntegromeDBLTB4R2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)LTB4R2
SNP (GeneSNP Utah)LTB4R2
SNP : HGBaseLTB4R2
Genetic variants : HAPMAPLTB4R2
Somatic Mutations in Cancer : COSMICLTB4R2 
CONAN: Copy Number AnalysisLTB4R2 
Mutations and Diseases : HGMDLTB4R2
OMIM605773   
GENETests605773   
Disease Genetic AssociationLTB4R2
Huge Navigator LTB4R2 [HugePedia]  LTB4R2 [HugeCancerGEM]
Genomic VariantsLTB4R2  LTB4R2 [DGVbeta]
snp3D : Map Gene to Disease56413
General knowledge
Homologs : HomoloGeneLTB4R2
Homology/Alignments : Family Browser (UCSC)LTB4R2
Phylogenetic Trees/Animal Genes : TreeFamLTB4R2
Chemical/Protein Interactions : CTD56413
Chemical/Pharm GKB GenePA134910672
Clinical trialLTB4R2
Cancer Resource (Charite)ENSG00000213906
Ontology : AmiGOleukotriene receptor activity  plasma membrane  integral to plasma membrane  chemotaxis  negative regulation of adenylate cyclase activity  
Ontology : EGO-EBIleukotriene receptor activity  plasma membrane  integral to plasma membrane  chemotaxis  negative regulation of adenylate cyclase activity  
Pathways : KEGGNeuroactive ligand-receptor interactionCalcium signaling pathway
Other databases
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
PubGeneLTB4R2
iHOPLTB4R2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:50:32 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.