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LTB4R2 (leukotriene B4 receptor 2)

Identity

Other namesBLT2
BLTR2
JULF2
KPG_004
LTB4-R 2
LTB4-R2
NOP9
HGNC (Hugo) LTB4R2
LocusID (NCBI) 56413
Atlas_Id 43648
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 24779357 and ends at 24781259 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LTB4R2   19260
Cards
Entrez_Gene (NCBI)LTB4R2  56413  leukotriene B4 receptor 2
AliasesBLT2; BLTR2; JULF2; KPG_004; 
LTB4-R; LTB4-R2; NOP9
GeneCards (Weizmann)LTB4R2
Ensembl hg19 (Hinxton)ENSG00000213906 [Gene_View]  chr14:24779357-24781259 [Contig_View]  LTB4R2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000213906 [Gene_View]  chr14:24779357-24781259 [Contig_View]  LTB4R2 [Vega]
ICGC DataPortalENSG00000213906
TCGA cBioPortalLTB4R2
AceView (NCBI)LTB4R2
Genatlas (Paris)LTB4R2
WikiGenes56413
SOURCE (Princeton)LTB4R2
Genomic and cartography
GoldenPath hg19 (UCSC)LTB4R2  -     chr14:24779357-24781259 +  14q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LTB4R2  -     14q12   [Description]    (hg38-Dec_2013)
EnsemblLTB4R2 - 14q12 [CytoView hg19]  LTB4R2 - 14q12 [CytoView hg38]
Mapping of homologs : NCBILTB4R2 [Mapview hg19]  LTB4R2 [Mapview hg38]
OMIM605773   
Gene and transcription
Genbank (Entrez)AB029892 AB032558 AB044402 AF277230 AF308571
RefSeq transcript (Entrez)NM_001164692 NM_001164693 NM_019839
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)LTB4R2
Cluster EST : UnigeneHs.657595 [ NCBI ]
CGAP (NCI)Hs.657595
Alternative Splicing GalleryENSG00000213906
Gene ExpressionLTB4R2 [ NCBI-GEO ]   LTB4R2 [ EBI - ARRAY_EXPRESS ]   LTB4R2 [ SEEK ]   LTB4R2 [ MEM ]
Gene Expression Viewer (FireBrowse)LTB4R2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56413
GTEX Portal (Tissue expression)LTB4R2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPC1 (Uniprot)
NextProtQ9NPC1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPC1
Splice isoforms : SwissVarQ9NPC1 (Swissvar)
PhosPhoSitePlusQ9NPC1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Leukotriene_B4_rcpt    Leukotriene_B4_typ-2_rcpt   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM Disease mutations56413
Blocks (Seattle)LTB4R2
SuperfamilyQ9NPC1
Human Protein AtlasENSG00000213906
Peptide AtlasQ9NPC1
HPRD16153
IPIIPI00022867   IPI00982088   IPI00980914   IPI00983927   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPC1
IntAct (EBI)Q9NPC1
FunCoupENSG00000213906
BioGRIDLTB4R2
STRING (EMBL)LTB4R2
ZODIACLTB4R2
Ontologies - Pathways
QuickGOQ9NPC1
Ontology : AmiGOleukotriene B4 receptor activity  leukotriene receptor activity  plasma membrane  integral component of plasma membrane  chemotaxis  inflammatory response  negative regulation of adenylate cyclase activity  phospholipase C-activating G-protein coupled receptor signaling pathway  neuropeptide signaling pathway  G-protein coupled peptide receptor activity  membrane  keratinocyte migration  leukotriene signaling pathway  
Ontology : EGO-EBIleukotriene B4 receptor activity  leukotriene receptor activity  plasma membrane  integral component of plasma membrane  chemotaxis  inflammatory response  negative regulation of adenylate cyclase activity  phospholipase C-activating G-protein coupled receptor signaling pathway  neuropeptide signaling pathway  G-protein coupled peptide receptor activity  membrane  keratinocyte migration  leukotriene signaling pathway  
Pathways : KEGGCalcium signaling pathway    Neuroactive ligand-receptor interaction   
NDEx NetworkLTB4R2
Atlas of Cancer Signalling NetworkLTB4R2
Wikipedia pathwaysLTB4R2
Orthology - Evolution
OrthoDB56413
GeneTree (enSembl)ENSG00000213906
Phylogenetic Trees/Animal Genes : TreeFamLTB4R2
Homologs : HomoloGeneLTB4R2
Homology/Alignments : Family Browser (UCSC)LTB4R2
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerLTB4R2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LTB4R2
dbVarLTB4R2
ClinVarLTB4R2
1000_GenomesLTB4R2 
Exome Variant ServerLTB4R2
ExAC (Exome Aggregation Consortium)LTB4R2 (select the gene name)
Genetic variants : HAPMAP56413
Genomic Variants (DGV)LTB4R2 [DGVbeta]
Mutations
ICGC Data PortalLTB4R2 
TCGA Data PortalLTB4R2 
Broad Tumor PortalLTB4R2
OASIS PortalLTB4R2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLTB4R2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LTB4R2
DgiDB (Drug Gene Interaction Database)LTB4R2
DoCM (Curated mutations)LTB4R2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LTB4R2 (select a term)
intoGenLTB4R2
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)14:24779357-24781259  ENSG00000213906
CONAN: Copy Number AnalysisLTB4R2 
Mutations and Diseases : HGMDLTB4R2
OMIM605773   
MedgenLTB4R2
Genetic Testing Registry LTB4R2
NextProtQ9NPC1 [Medical]
TSGene56413
GENETestsLTB4R2
Huge Navigator LTB4R2 [HugePedia]
snp3D : Map Gene to Disease56413
BioCentury BCIQLTB4R2
ClinGenLTB4R2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56413
Chemical/Pharm GKB GenePA134910672
Clinical trialLTB4R2
Miscellaneous
canSAR (ICR)LTB4R2 (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLTB4R2
EVEXLTB4R2
GoPubMedLTB4R2
iHOPLTB4R2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 18:58:57 CEST 2016

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