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LTB4R2 (leukotriene B4 receptor 2)

Identity

Other namesBLT2
BLTR2
JULF2
KPG_004
LTB4-R 2
LTB4-R2
NOP9
HGNC (Hugo) LTB4R2
LocusID (NCBI) 56413
Location 14q12
Location_base_pair Starts at 24779357 and ends at 24781259 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LTB4R2   19260
Cards
Entrez_Gene (NCBI)LTB4R2  56413  leukotriene B4 receptor 2
GeneCards (Weizmann)LTB4R2
Ensembl hg19 (Hinxton)ENSG00000213906 [Gene_View]  chr14:24779357-24781259 [Contig_View]  LTB4R2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000213906 [Gene_View]  chr14:24779357-24781259 [Contig_View]  LTB4R2 [Vega]
ICGC DataPortalENSG00000213906
cBioPortalLTB4R2
AceView (NCBI)LTB4R2
Genatlas (Paris)LTB4R2
WikiGenes56413
SOURCE (Princeton)LTB4R2
Genomic and cartography
GoldenPath hg19 (UCSC)LTB4R2  -     chr14:24779357-24781259 +  14q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LTB4R2  -     14q12   [Description]    (hg38-Dec_2013)
EnsemblLTB4R2 - 14q12 [CytoView hg19]  LTB4R2 - 14q12 [CytoView hg38]
Mapping of homologs : NCBILTB4R2 [Mapview hg19]  LTB4R2 [Mapview hg38]
OMIM605773   
Gene and transcription
Genbank (Entrez)AB029892 AB032558 AB044402 AF277230 AF308571
RefSeq transcript (Entrez)NM_001164692 NM_001164693 NM_019839
RefSeq genomic (Entrez)AC_000146 NC_000014 NC_018925 NT_026437 NW_001838110 NW_004929393
Consensus coding sequences : CCDS (NCBI)LTB4R2
Cluster EST : UnigeneHs.657595 [ NCBI ]
CGAP (NCI)Hs.657595
Alternative Splicing : Fast-db (Paris)GSHG0033218
Alternative Splicing GalleryENSG00000213906
Gene ExpressionLTB4R2 [ NCBI-GEO ]     LTB4R2 [ SEEK ]   LTB4R2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPC1 (Uniprot)
NextProtQ9NPC1  [Medical]
With graphics : InterProQ9NPC1
Splice isoforms : SwissVarQ9NPC1 (Swissvar)
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Leukotriene_B4_rcpt    Leukotriene_B4_typ-2_rcpt   
Related proteins : CluSTrQ9NPC1
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM Disease mutations56413
Blocks (Seattle)Q9NPC1
Human Protein AtlasENSG00000213906
Peptide AtlasQ9NPC1
HPRD16153
IPIIPI00022867   IPI00982088   IPI00980914   IPI00983927   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPC1
IntAct (EBI)Q9NPC1
FunCoupENSG00000213906
BioGRIDLTB4R2
IntegromeDBLTB4R2
STRING (EMBL)LTB4R2
Ontologies - Pathways
QuickGOQ9NPC1
Ontology : AmiGOleukotriene receptor activity  plasma membrane  integral component of plasma membrane  chemotaxis  G-protein coupled receptor signaling pathway  negative regulation of adenylate cyclase activity  membrane  
Ontology : EGO-EBIleukotriene receptor activity  plasma membrane  integral component of plasma membrane  chemotaxis  G-protein coupled receptor signaling pathway  negative regulation of adenylate cyclase activity  membrane  
Pathways : KEGGCalcium signaling pathway    Neuroactive ligand-receptor interaction   
Protein Interaction DatabaseLTB4R2
DoCM (Curated mutations)LTB4R2
Wikipedia pathwaysLTB4R2
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerLTB4R2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LTB4R2
dbVarLTB4R2
ClinVarLTB4R2
1000_GenomesLTB4R2 
Exome Variant ServerLTB4R2
SNP (GeneSNP Utah)LTB4R2
SNP : HGBaseLTB4R2
Genetic variants : HAPMAPLTB4R2
Genomic VariantsLTB4R2  LTB4R2 [DGVbeta]
Mutations
ICGC Data PortalENSG00000213906 
Somatic Mutations in Cancer : COSMICLTB4R2 
CONAN: Copy Number AnalysisLTB4R2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)14:24779357-24781259
Mutations and Diseases : HGMDLTB4R2
OMIM605773   
MedgenLTB4R2
NextProtQ9NPC1 [Medical]
GENETestsLTB4R2
Disease Genetic AssociationLTB4R2
Huge Navigator LTB4R2 [HugePedia]  LTB4R2 [HugeCancerGEM]
snp3D : Map Gene to Disease56413
DGIdb (Drug Gene Interaction db)LTB4R2
General knowledge
Homologs : HomoloGeneLTB4R2
Homology/Alignments : Family Browser (UCSC)LTB4R2
Phylogenetic Trees/Animal Genes : TreeFamLTB4R2
Chemical/Protein Interactions : CTD56413
Chemical/Pharm GKB GenePA134910672
Clinical trialLTB4R2
Cancer Resource (Charite)ENSG00000213906
Other databases
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
CoreMineLTB4R2
GoPubMedLTB4R2
iHOPLTB4R2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 23:31:07 CET 2014

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