LTBP1 (latent transforming growth factor beta binding protein 1)

Identity

Other names	MGC163161
HGNC	LTBP1
Location	2p22-p21
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	LTBP1   6714
Entrez_Gene	LTBP1  4052  latent transforming growth factor beta binding protein 1
	Cards
GeneCards	LTBP1
Ensembl	LTBP1 [Search_View]   ENSG00000049323 [Gene_View]
Genatlas	LTBP1
GeneLynx	LTBP1
eGenome	LTBP1
euGene	4052
	Genomic and cartography
GoldenPath	LTBP1  -     chr2:33213181-33478079 +  2p22.3   [Description]    (hg18-March_2006)
Ensembl	LTBP1 - 2p22.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	LTBP1
	Gene and transcription
Genbank	AA935267 [ ENTREZ ]
Genbank	AB208801 [ ENTREZ ]
Genbank	AF489528 [ ENTREZ ]
Genbank	AL703596 [ ENTREZ ]
Genbank	BC130289 [ ENTREZ ]
RefSeq	NM_000627 [ SRS ]    NM_000627 [ ENTREZ ]
RefSeq	NM_206943 [ SRS ]    NM_206943 [ ENTREZ ]
RefSeq	AC_000045 [ SRS ]    AC_000045 [ ENTREZ ]
RefSeq	AC_000134 [ SRS ]    AC_000134 [ ENTREZ ]
RefSeq	NC_000002 [ SRS ]    NC_000002 [ ENTREZ ]
RefSeq	NT_022184 [ SRS ]    NT_022184 [ ENTREZ ]
RefSeq	NW_001838769 [ SRS ]    NW_001838769 [ ENTREZ ]
RefSeq	NW_927719 [ SRS ]    NW_927719 [ ENTREZ ]
AceView	LTBP1 AceView - NCBI
Unigene	Hs.713533 [ SRS ]    Hs.713533 [ NCBI ]     HS713533 [ spliceNest ]
Fast-db	3932 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P22064 [ SRS]    P22064 [ EXPASY ]     P22064 [ INTERPRO ]     P22064 [ UNIPROT ]
Prosite	PS00010 ASX_HYDROXYL [ SRS ]    PS00010 ASX_HYDROXYL [ Expasy ]
Prosite	PS00022 EGF_1 [ SRS ]    PS00022 EGF_1 [ Expasy ]
Prosite	PS01186 EGF_2 [ SRS ]    PS01186 EGF_2 [ Expasy ]
Prosite	PS50026 EGF_3 [ SRS ]    PS50026 EGF_3 [ Expasy ]
Prosite	PS01187 EGF_CA [ SRS ]    PS01187 EGF_CA [ Expasy ]
Prosite	PS51364 TB [ SRS ]    PS51364 TB [ Expasy ]
Interpro	IPR006210 EGF [ SRS ]    IPR006210 EGF [ EBI ]
Interpro	IPR000152 EGF-type_Asp/Asn_hydroxyl_CS [ SRS ]    IPR000152 EGF-type_Asp/Asn_hydroxyl_CS [ EBI ]
Interpro	IPR000742 EGF_3 [ SRS ]    IPR000742 EGF_3 [ EBI ]
Interpro	IPR001881 EGF_Ca_bd [ SRS ]    IPR001881 EGF_Ca_bd [ EBI ]
Interpro	IPR013091 EGF_Ca_bd_2 [ SRS ]    IPR013091 EGF_Ca_bd_2 [ EBI ]
Interpro	IPR006209 EGF_like [ SRS ]    IPR006209 EGF_like [ EBI ]
Interpro	IPR013032 EGF_like_reg_CS [ SRS ]    IPR013032 EGF_like_reg_CS [ EBI ]
Interpro	IPR002212 Fibril-assoc [ SRS ]    IPR002212 Fibril-assoc [ EBI ]
CluSTr	P22064
Pfam	PF00008 EGF [ SRS ]    PF00008 EGF [ Sanger ]    pfam00008 [ NCBI-CDD ]
Pfam	PF07645 EGF_CA [ SRS ]    PF07645 EGF_CA [ Sanger ]    pfam07645 [ NCBI-CDD ]
Pfam	PF00683 TB [ SRS ]    PF00683 TB [ Sanger ]    pfam00683 [ NCBI-CDD ]
Smart	SM00181 EGF [EMBL]
Smart	SM00179 EGF_CA [EMBL]
Blocks	P22064
PDB	1KSQ [ SRS ]    1KSQ [ PdbSum ],   1KSQ [ IMB ]   1KSQ [ RSDB ]
HPRD	01039
	Protein Interaction databases
DIP	P22064
IntAct	P22064
	Polymorphism : SNP, mutations, diseases
OMIM	150390    [ map ]
GENECLINICS	150390
SNP	LTBP1 [dbSNP-NCBI]
SNP	NM_000627 [SNP-NCI]
SNP	NM_206943 [SNP-NCI]
SNP	LTBP1 [GeneSNPs - Utah]  LTBP1] [HGBASE - SRS]
HAPMAP	LTBP1 [HAPMAP]
COSMIC	LTBP1 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	LTBP1
	General knowledge
Family Browser	LTBP1 [UCSC Family Browser]
SOURCE	NM_000627
SOURCE	NM_206943
SMD	Hs.713533
SAGE	Hs.713533
GO	transforming growth factor beta receptor activity [Amigo]  transforming growth factor beta receptor activity
GO	binding [Amigo]  binding
GO	calcium ion binding [Amigo]  calcium ion binding
GO	extracellular region [Amigo]  extracellular region
GO	proteinaceous extracellular matrix [Amigo]  proteinaceous extracellular matrix
GO	proteinaceous extracellular matrix [Amigo]  proteinaceous extracellular matrix
GO	biological_process [Amigo]  biological_process
GO	growth factor binding [Amigo]  growth factor binding
KEGG	TGF-beta signaling pathway
PubGene	LTBP1
TreeFam	LTBP1
CTD	4052 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	LTBP1 Related clones (RZPD - Berlin)
	PubMed
PubMed	25 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:18:38 2008