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LTV1 (LTV1 ribosome biogenesis factor)

Identity

Alias_namesC6orf93
chromosome 6 open reading frame 93
LTV1 homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ14909
dJ468K18.4
Other alias
HGNC (Hugo) LTV1
LocusID (NCBI) 84946
Atlas_Id 68697
Location 6q24.2  [Link to chromosome band 6q24]
Location_base_pair Starts at 143843273 and ends at 143863812 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LTV1 (6q24.2) / ATG5 (6q21)LTV1 (6q24.2) / LTV1 (6q24.2)NFIA (1p31.3) / LTV1 (6q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(1;6)(p31;q24) NFIA/LTV1
t(6;6)(q21;q24) LTV1/ATG5


External links

Nomenclature
HGNC (Hugo)LTV1   21173
Cards
Entrez_Gene (NCBI)LTV1  84946  LTV1 ribosome biogenesis factor
AliasesC6orf93; dJ468K18.4
GeneCards (Weizmann)LTV1
Ensembl hg19 (Hinxton)ENSG00000135521 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135521 [Gene_View]  ENSG00000135521 [Sequence]  chr6:143843273-143863812 [Contig_View]  LTV1 [Vega]
ICGC DataPortalENSG00000135521
TCGA cBioPortalLTV1
AceView (NCBI)LTV1
Genatlas (Paris)LTV1
WikiGenes84946
SOURCE (Princeton)LTV1
Genetics Home Reference (NIH)LTV1
Genomic and cartography
GoldenPath hg38 (UCSC)LTV1  -     chr6:143843273-143863812 +  6q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LTV1  -     6q24.2   [Description]    (hg19-Feb_2009)
EnsemblLTV1 - 6q24.2 [CytoView hg19]  LTV1 - 6q24.2 [CytoView hg38]
Mapping of homologs : NCBILTV1 [Mapview hg19]  LTV1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA453435 AK027815 AK091447 AK095269 AK300360
RefSeq transcript (Entrez)NM_001329953 NM_032860
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LTV1
Cluster EST : UnigeneHs.185675 [ NCBI ]
CGAP (NCI)Hs.185675
Alternative Splicing GalleryENSG00000135521
Gene ExpressionLTV1 [ NCBI-GEO ]   LTV1 [ EBI - ARRAY_EXPRESS ]   LTV1 [ SEEK ]   LTV1 [ MEM ]
Gene Expression Viewer (FireBrowse)LTV1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84946
GTEX Portal (Tissue expression)LTV1
Human Protein AtlasENSG00000135521-LTV1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GA3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GA3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GA3
Splice isoforms : SwissVarQ96GA3
PhosPhoSitePlusQ96GA3
Domains : Interpro (EBI)LTV   
Domain families : Pfam (Sanger)LTV (PF04180)   
Domain families : Pfam (NCBI)pfam04180   
Conserved Domain (NCBI)LTV1
DMDM Disease mutations84946
Blocks (Seattle)LTV1
SuperfamilyQ96GA3
Human Protein Atlas [tissue]ENSG00000135521-LTV1 [tissue]
Peptide AtlasQ96GA3
HPRD12906
IPIIPI00153032   
Protein Interaction databases
DIP (DOE-UCLA)Q96GA3
IntAct (EBI)Q96GA3
FunCoupENSG00000135521
BioGRIDLTV1
STRING (EMBL)LTV1
ZODIACLTV1
Ontologies - Pathways
QuickGOQ96GA3
Ontology : AmiGOribosomal small subunit export from nucleus  protein binding  nucleus  nucleoplasm  nucleoplasm  cytosol  cytosol  rRNA processing  preribosome, small subunit precursor  late endosome membrane  EGO complex  ribosomal small subunit biogenesis  
Ontology : EGO-EBIribosomal small subunit export from nucleus  protein binding  nucleus  nucleoplasm  nucleoplasm  cytosol  cytosol  rRNA processing  preribosome, small subunit precursor  late endosome membrane  EGO complex  ribosomal small subunit biogenesis  
NDEx NetworkLTV1
Atlas of Cancer Signalling NetworkLTV1
Wikipedia pathwaysLTV1
Orthology - Evolution
OrthoDB84946
GeneTree (enSembl)ENSG00000135521
Phylogenetic Trees/Animal Genes : TreeFamLTV1
HOVERGENQ96GA3
HOGENOMQ96GA3
Homologs : HomoloGeneLTV1
Homology/Alignments : Family Browser (UCSC)LTV1
Gene fusions - Rearrangements
Fusion : QuiverLTV1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLTV1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LTV1
dbVarLTV1
ClinVarLTV1
1000_GenomesLTV1 
Exome Variant ServerLTV1
ExAC (Exome Aggregation Consortium)ENSG00000135521
GNOMAD BrowserENSG00000135521
Varsome BrowserLTV1
Genetic variants : HAPMAP84946
Genomic Variants (DGV)LTV1 [DGVbeta]
DECIPHERLTV1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLTV1 
Mutations
ICGC Data PortalLTV1 
TCGA Data PortalLTV1 
Broad Tumor PortalLTV1
OASIS PortalLTV1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLTV1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLTV1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LTV1
DgiDB (Drug Gene Interaction Database)LTV1
DoCM (Curated mutations)LTV1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LTV1 (select a term)
intoGenLTV1
Cancer3DLTV1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLTV1
MedgenLTV1
Genetic Testing Registry LTV1
NextProtQ96GA3 [Medical]
TSGene84946
GENETestsLTV1
Target ValidationLTV1
Huge Navigator LTV1 [HugePedia]
snp3D : Map Gene to Disease84946
BioCentury BCIQLTV1
ClinGenLTV1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84946
Chemical/Pharm GKB GenePA134893631
Clinical trialLTV1
Miscellaneous
canSAR (ICR)LTV1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLTV1
EVEXLTV1
GoPubMedLTV1
iHOPLTV1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Jul 30 14:11:58 CEST 2018

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